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To: <gentoo-science@g.o>
From: Christopher Schwan <cschwan@...>
Subject: Re: 'emerge -vuND sage' fails due to issues with masking.
Date: Mon, 22 Aug 2011 11:44:59 +0200
On Monday 22 August 2011 11:29:34 rose@... wrote:
> 'emerge -vuND sage' now fails for me with:
> 
> root@caiman:/root(61)# emerge -vuND sage
> 
> These are the packages that would be merged, in order:
> 
> Calculating dependencies... done!
> [ebuild     U #] sci-mathematics/sage-baselayout-4.7.2_alpha1 [4.7.1]
> USE="X -debug -testsuite" 1,111 kB [1]
> [ebuild     U  ] sci-mathematics/sage-extcode-4.7.2_alpha1 [4.7.1]
> 11,894 kB [1]
> [ebuild  N     ] sci-mathematics/pari-data-20110727  45,753 kB [0]
> [ebuild     UD ] dev-python/pexpect-2.0 [2.4-r1] USE="(-doc%*)
> (-examples%*)" 0 kB [1]
> [ebuild     UD ] dev-python/numpy-1.5.1 [1.6.1] USE="doc lapack -test"
> 0 kB [0]
> [ebuild     U  ] sci-mathematics/sage-notebook-0.8.20 [0.8.19]
> USE="java" 18,442 kB [1]
> [ebuild  N     ] sci-mathematics/pari-2.5.0-r3  USE="X data doc fltk
> gmp" 2,651 kB [0]
> [ebuild  N     ] dev-python/mpmath-0.17  USE="doc examples gmp
> -matplotlib -test" 0 kB [0]
> [ebuild  N     ] sci-libs/flint-1.6  USE="doc ntl -test" 0 kB [1]
> [ebuild  N    #] sci-mathematics/sage-doc-4.7.2_alpha1  USE="pdf
> -html" 53,162 kB [1]
> [ebuild  N     ] sci-mathematics/eclib-20100711  USE="-pari24" 0 kB [1]
> [ebuild  N    #] sci-mathematics/lcalc-1.23-r4  USE="pari" 0 kB [1]
> [ebuild  N     ] dev-python/sympy-0.7.1  USE="doc examples gtk latex
> opengl pdf png texmacs -imaging -ipython -mathml -test" 0 kB [0]
> [ebuild  N     ] sci-mathematics/sympow-1.018.1_p8-r1  USE="-pari24" 0 kB
> [1] [ebuild  N     ] sci-mathematics/genus2reduction-0.3_p8-r1  0 kB [1]
> [ebuild  N     ] dev-python/networkx-1.2  USE="examples" 0 kB [1]
> [ebuild  N     ] dev-tex/sage-latex-2.2.5-r2  USE="examples" 0 kB [1]
> [ebuild  N     ] sci-mathematics/polybori-0.7.1  USE="doc gd sage" 0 kB [1]
> [ebuild  N    #] sci-mathematics/sage-clib-4.7.2_alpha1  0 kB [1]
> [ebuild  N    #] sci-mathematics/sage-4.7.2_alpha1  USE="examples
> latex -mpc -testsuite" 0 kB [1]
> 
> Total: 20 packages (3 upgrades, 2 downgrades, 15 new), Size of
> downloads: 133,011 kB
> Portage tree and overlays:
>   [0] /usr/portage
>   [1] /var/lib/layman/sage-on-gentoo
> 
> The following mask changes are necessary to proceed:
> #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
> # /etc/portage/package.mask:
> #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
> # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
> # preparing 4.7.2
> 
> > =sci-mathematics/lcalc-1.23-r4
> 
> #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
> # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
> # preparing 4.7.2
> 
> > =sci-mathematics/sage-clib-4.7.2_alpha1
> 
> #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
> # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
> # preparing 4.7.2
> 
> > =sci-mathematics/sage-baselayout-4.7.2_alpha1
> 
> #required by sage (argument)
> # /etc/portage/package.mask:
> #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
> # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
> # preparing 4.7.2
> #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
> # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
> # preparing 4.7.2
> #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
> # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
> # preparing 4.7.2
> #required by sage (argument)
> # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
> # preparing 4.7.2
> 
> > =sci-mathematics/sage-4.7.2_alpha1
> 
> #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
> # /etc/portage/package.mask:
> #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
> # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
> # preparing 4.7.2
> #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
> # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
> # preparing 4.7.2
> #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
> # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
> # preparing 4.7.2
> #required by sage (argument)
> # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
> # preparing 4.7.2
> #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
> # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
> # preparing 4.7.2
> 
> > =sci-mathematics/sage-doc-4.7.2_alpha1
> 
> But I think that I have just set this requested masking
> /etc/portage/package.maks:
> 
> 
> root@caiman:/root(62)# cat /etc/portage/package.mask
> 
> > =dev-java/jgraphx-1.4.1.1
> > =sci-libs/sprng-4.0
> 
> #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
> # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
> # preparing 4.7.2
> 
> > =sci-mathematics/lcalc-1.23-r4
> 
> #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
> # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
> # preparing 4.7.2
> 
> > =sci-mathematics/sage-clib-4.7.2_alpha1
> 
> #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
> # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
> # preparing 4.7.2
> 
> > =sci-mathematics/sage-baselayout-4.7.2_alpha1
> 
> #required by sage (argument)
> # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
> # preparing 4.7.2
> 
> > =sci-mathematics/sage-4.7.2_alpha1
> 
> #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
> # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
> # preparing 4.7.2
> 
> > =sci-mathematics/sage-doc-4.7.2_alpha1
> 
> Any hint is apprecieated.

Hi,

I dont know why portage wants to install 4.7.2_alpha1 but it should not - the 
latest stable is 4.7.1. Refresh your overlay (I just made a small change) and 
try again. Also, do not forget to compile sage-baselayout and sage itself with 
USE=testsuite because 4.7.1 is broken without (see other thread on the list). 
If it does not work, send me a list of already installed sage packages and 
their corresponding versions. If you are using eix, type

eix -I sage-

to get that list.

Cheers,
Christopher


Replies:
Re: 'emerge -vuND sage' fails due to issues with masking.
-- rose
References:
'emerge -vuND sage' fails due to issues with masking.
-- rose
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