| 1 |
Hi, |
| 2 |
|
| 3 |
I am not sure this problem is related to gentoo, sorry about that if |
| 4 |
it happens to be unrelated... |
| 5 |
|
| 6 |
I have a C++ code linked to libxml2, and used through a python |
| 7 |
wrapper, whenever I try to load the python module I get: |
| 8 |
ImportError: /space/dechaume/prefix/usr/lib/libxml2.so.2: symbol |
| 9 |
gzopen64, version ZLIB_1.2.3.3 not defined in file libz.so.1 with link |
| 10 |
time reference |
| 11 |
|
| 12 |
I don't know how to interpret this message :-/ |
| 13 |
|
| 14 |
Here are some informations: |
| 15 |
|
| 16 |
> emerge --info libxml2 |
| 17 |
Portage 2.2.01.15553-prefix (prefix/linux/amd64, gcc-4.2.4, |
| 18 |
unavailable, 2.6.30.10-105.2.23.fc11.x86_64 x86_64) |
| 19 |
================================================================= |
| 20 |
System Settings |
| 21 |
================================================================= |
| 22 |
System uname: Linux-2.6.30.10-105.2.23.fc11.x86_64-x86_64-Intel-R-_Xeon-R-_CPU_E5530_@_2.40GHz-with-fedora-11-Leonidas |
| 23 |
Timestamp of tree: Sun, 03 Oct 2010 21:41:20 +0000 |
| 24 |
ccache version 2.4 [disabled] |
| 25 |
app-shells/bash: 4.1_p7 |
| 26 |
dev-lang/python: 2.6.5-r2 |
| 27 |
sys-devel/autoconf: 2.65-r1 |
| 28 |
sys-devel/automake: 1.11.1 |
| 29 |
sys-devel/binutils: 2.20.51.0.10 |
| 30 |
sys-devel/gcc: 4.2.4-r01.2, 4.4.4-r1 |
| 31 |
sys-devel/gcc-config: 1.4.1-r00.2 |
| 32 |
sys-devel/libtool: 2.2.10 |
| 33 |
sys-devel/make: 3.81-r2 |
| 34 |
virtual/os-headers: 2.6.35 (sys-kernel/linux-headers) |
| 35 |
ACCEPT_KEYWORDS="~amd64-linux" |
| 36 |
ACCEPT_LICENSE="* -@EULA" |
| 37 |
CBUILD="x86_64-pc-linux-gnu" |
| 38 |
CFLAGS="-O2 -pipe -march=native" |
| 39 |
CHOST="x86_64-pc-linux-gnu" |
| 40 |
CONFIG_PROTECT="/etc" |
| 41 |
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/gconf / |
| 42 |
etc/revdep-rebuild /etc/terminfo" |
| 43 |
CXXFLAGS="-O2 -pipe -march=native" |
| 44 |
DISTDIR="/space/dechaume/prefix/usr/portage/distfiles" |
| 45 |
FEATURES="assume-digests collision-protect distlocks fixlafiles |
| 46 |
fixpackages news parallel-fetch preserve-libs protect-owned sfperms |
| 47 |
strict unknown-features-warn unmerge-logs unmerge-orphans userfetch" |
| 48 |
GENTOO_MIRRORS="http://distfiles.gentoo.org" |
| 49 |
LANG="en_US.UTF-8" |
| 50 |
LDFLAGS="-Wl,-O1" |
| 51 |
MAKEOPTS="-j8" |
| 52 |
PKGDIR="/space/dechaume/prefix/usr/portage/packages" |
| 53 |
PORTAGE_CONFIGROOT="/space/dechaume/prefix/" |
| 54 |
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times -- |
| 55 |
compress --force --whole-file --delete --stats --timeout=180 -- |
| 56 |
exclude=/distfiles --exclude=/local --exclude=/packages" |
| 57 |
PORTAGE_TMPDIR="/space/dechaume/prefix/var/tmp" |
| 58 |
PORTDIR="/space/dechaume/prefix/usr/portage" |
| 59 |
PORTDIR_OVERLAY="/space/dechaume/gentoo/overlay" |
| 60 |
SYNC="rsync://rsync.prefix.freens.org/gentoo-portage-prefix" |
| 61 |
USE="amd64 bzip2 cxx gdbm iconv ipv6 mmx mudflap ncurses nls nptl |
| 62 |
nptlonly openmp pcre perl prefix python readline sse sse2 sse3 ssl |
| 63 |
unicode zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x |
| 64 |
ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel |
| 65 |
intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem |
| 66 |
ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop |
| 67 |
empty extplug file hooks iec958 ioplug ladspa lfloat linear meter |
| 68 |
mmap_emul mulaw multi null plug rate route share shm softvol" |
| 69 |
APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon |
| 70 |
authn_dbm authn_default authn_file authz_dbm authz_default |
| 71 |
authz_groupfile authz_host authz_owner authz_user autoindex cache cgi |
| 72 |
cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter |
| 73 |
file_cache filter headers include info log_config logio mem_cache mime |
| 74 |
mime_magic negotiation rewrite setenvif speling status unique_id |
| 75 |
userdir usertrack vhost_alias" COLLECTD_PLUGINS="df interface irq load |
| 76 |
memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech |
| 77 |
aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 |
| 78 |
nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf |
| 79 |
superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse |
| 80 |
evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 |
| 81 |
lb216 lcdm001 mtxorb ncurses text" RUBY_TARGETS="ruby18" |
| 82 |
USERLAND="GNU" VIDEO_CARDS="fbdev glint intel mach64 mga neomagic |
| 83 |
nouveau nv r128 radeon savage sis tdfx trident vesa via vmware voodoo" |
| 84 |
XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset |
| 85 |
ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat |
| 86 |
logmark ipmark dhcpmac delude chaos account" |
| 87 |
Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, INSTALL_MASK, |
| 88 |
LC_ALL, LINGUAS, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, |
| 89 |
PORTAGE_RSYNC_EXTRA_OPTS |
| 90 |
|
| 91 |
================================================================= |
| 92 |
Package Settings |
| 93 |
================================================================= |
| 94 |
|
| 95 |
dev-libs/libxml2-2.7.7 was built with the following: |
| 96 |
USE="ipv6 (prefix) python readline test -debug -doc -examples" |
| 97 |
|
| 98 |
|
| 99 |
> emerge --info zlib |
| 100 |
Portage 2.2.01.15553-prefix (prefix/linux/amd64, gcc-4.2.4, |
| 101 |
unavailable, 2.6.30.10-105.2.23.fc11.x86_64 x86_64) |
| 102 |
================================================================= |
| 103 |
System Settings |
| 104 |
================================================================= |
| 105 |
System uname: Linux-2.6.30.10-105.2.23.fc11.x86_64-x86_64-Intel-R-_Xeon-R-_CPU_E5530_@_2.40GHz-with-fedora-11-Leonidas |
| 106 |
Timestamp of tree: Sun, 03 Oct 2010 21:41:20 +0000 |
| 107 |
ccache version 2.4 [disabled] |
| 108 |
app-shells/bash: 4.1_p7 |
| 109 |
dev-lang/python: 2.6.5-r2 |
| 110 |
sys-devel/autoconf: 2.65-r1 |
| 111 |
sys-devel/automake: 1.11.1 |
| 112 |
sys-devel/binutils: 2.20.51.0.10 |
| 113 |
sys-devel/gcc: 4.2.4-r01.2, 4.4.4-r1 |
| 114 |
sys-devel/gcc-config: 1.4.1-r00.2 |
| 115 |
sys-devel/libtool: 2.2.10 |
| 116 |
sys-devel/make: 3.81-r2 |
| 117 |
virtual/os-headers: 2.6.35 (sys-kernel/linux-headers) |
| 118 |
ACCEPT_KEYWORDS="~amd64-linux" |
| 119 |
ACCEPT_LICENSE="* -@EULA" |
| 120 |
CBUILD="x86_64-pc-linux-gnu" |
| 121 |
CFLAGS="-O2 -pipe -march=native" |
| 122 |
CHOST="x86_64-pc-linux-gnu" |
| 123 |
CONFIG_PROTECT="/etc" |
| 124 |
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/gconf / |
| 125 |
etc/revdep-rebuild /etc/terminfo" |
| 126 |
CXXFLAGS="-O2 -pipe -march=native" |
| 127 |
DISTDIR="/space/dechaume/prefix/usr/portage/distfiles" |
| 128 |
FEATURES="assume-digests collision-protect distlocks fixlafiles |
| 129 |
fixpackages news parallel-fetch preserve-libs protect-owned sfperms |
| 130 |
strict unknown-features-warn unmerge-logs unmerge-orphans userfetch" |
| 131 |
GENTOO_MIRRORS="http://distfiles.gentoo.org" |
| 132 |
LANG="en_US.UTF-8" |
| 133 |
LDFLAGS="-Wl,-O1" |
| 134 |
MAKEOPTS="-j8" |
| 135 |
PKGDIR="/space/dechaume/prefix/usr/portage/packages" |
| 136 |
PORTAGE_CONFIGROOT="/space/dechaume/prefix/" |
| 137 |
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times -- |
| 138 |
compress --force --whole-file --delete --stats --timeout=180 -- |
| 139 |
exclude=/distfiles --exclude=/local --exclude=/packages" |
| 140 |
PORTAGE_TMPDIR="/space/dechaume/prefix/var/tmp" |
| 141 |
PORTDIR="/space/dechaume/prefix/usr/portage" |
| 142 |
PORTDIR_OVERLAY="/space/dechaume/gentoo/overlay" |
| 143 |
SYNC="rsync://rsync.prefix.freens.org/gentoo-portage-prefix" |
| 144 |
USE="amd64 bzip2 cxx gdbm iconv ipv6 mmx mudflap ncurses nls nptl |
| 145 |
nptlonly openmp pcre perl prefix python readline sse sse2 sse3 ssl |
| 146 |
unicode zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x |
| 147 |
ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel |
| 148 |
intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem |
| 149 |
ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop |
| 150 |
empty extplug file hooks iec958 ioplug ladspa lfloat linear meter |
| 151 |
mmap_emul mulaw multi null plug rate route share shm softvol" |
| 152 |
APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon |
| 153 |
authn_dbm authn_default authn_file authz_dbm authz_default |
| 154 |
authz_groupfile authz_host authz_owner authz_user autoindex cache cgi |
| 155 |
cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter |
| 156 |
file_cache filter headers include info log_config logio mem_cache mime |
| 157 |
mime_magic negotiation rewrite setenvif speling status unique_id |
| 158 |
userdir usertrack vhost_alias" COLLECTD_PLUGINS="df interface irq load |
| 159 |
memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech |
| 160 |
aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 |
| 161 |
nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf |
| 162 |
superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse |
| 163 |
evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 |
| 164 |
lb216 lcdm001 mtxorb ncurses text" RUBY_TARGETS="ruby18" |
| 165 |
USERLAND="GNU" VIDEO_CARDS="fbdev glint intel mach64 mga neomagic |
| 166 |
nouveau nv r128 radeon savage sis tdfx trident vesa via vmware voodoo" |
| 167 |
XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset |
| 168 |
ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat |
| 169 |
logmark ipmark dhcpmac delude chaos account" |
| 170 |
Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, INSTALL_MASK, |
| 171 |
LC_ALL, LINGUAS, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, |
| 172 |
PORTAGE_RSYNC_EXTRA_OPTS |
| 173 |
|
| 174 |
================================================================= |
| 175 |
Package Settings |
| 176 |
================================================================= |
| 177 |
|
| 178 |
sys-libs/zlib-1.2.5-r2 was built with the following: |
| 179 |
USE="(prefix)" |
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