Re: [gentoo-alt] gentoo prefix "Filesize does not match recorded size" error : binutils-config-3

[Osamu Ogasawara]

Dear Mr. Groffen

Thank you for your reply.
I hasten to report the first problem.

2012/11/17 Fabian Groffen <grobian@g.o>:
> On 16-11-2012 23:28:03 +0900, Osamu Ogasawara wrote:
>> Dear all,
>>
>> I'm trying to install gentoo prefix on a host:   x86_64-pc-linux-gnu.
>>
>> In the stage1, I got compile error when building python.
>> In order to workaround this error, I edited bootstrap-prefix.sh as follows.
>
> Can you post the problem you get?

The error massage is following below.

$ ./bootstrap-prefix.sh $EPREFIX/tmp stage1
...

Python build finished, but the necessary bits to build these modules
were not found:
_ssl               bsddb185           dl
gdbm               imageop            sunaudiodev
To find the necessary bits, look in setup.py in detect_modules() for
the module's name.


Failed to build these modules:
_bsddb

running build_scripts
creating build/scripts-2.7
copying and adjusting
/lustre2/home/oogasawa/gentoo4/tmp/var/tmp/python-2.7.2/Python-2.7.2/Tools/scripts/pydoc
-> build/scripts-2.7
copying and adjusting
/lustre2/home/oogasawa/gentoo4/tmp/var/tmp/python-2.7.2/Python-2.7.2/Tools/scripts/idle
-> build/scripts-2.7
copying and adjusting
/lustre2/home/oogasawa/gentoo4/tmp/var/tmp/python-2.7.2/Python-2.7.2/Tools/scripts/2to3
-> build/scripts-2.7
copying and adjusting
/lustre2/home/oogasawa/gentoo4/tmp/var/tmp/python-2.7.2/Python-2.7.2/Lib/smtpd.py
-> build/scripts-2.7
changing mode of build/scripts-2.7/pydoc from 644 to 755
changing mode of build/scripts-2.7/idle from 644 to 755
changing mode of build/scripts-2.7/2to3 from 644 to 755
changing mode of build/scripts-2.7/smtpd.py from 644 to 755
make: *** [sharedmods] Error 1

-----------------------
The following is the versions of gcc, autoconf, ...

$ gcc -v
Using built-in specs.
Target: x86_64-redhat-linux
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man
--infodir=/usr/share/info
--with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap
--enable-shared --enable-threads=posix --enable-checking=release
--with-system-zlib --enable-__cxa_atexit
--disable-libunwind-exceptions --enable-gnu-unique-object
--enable-languages=c,c++,objc,obj-c++,java,fortran,ada
--enable-java-awt=gtk --disable-dssi
--with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre
--enable-libgcj-multifile --enable-java-maintainer-mode
--with-ecj-jar=/usr/share/java/eclipse-ecj.jar
--disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic
--with-arch_32=i686 --build=x86_64-redhat-linux
Thread model: posix
gcc version 4.4.5 20110214 (Red Hat 4.4.5-6) (GCC)

$ autoconf --version
autoconf (GNU Autoconf) 2.63
Copyright (C) 2008 Free Software Foundation, Inc.
License GPLv2+: GNU GPL version 2 or later
<http://gnu.org/licenses/old-licenses/gpl-2.0.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.

Written by David J. MacKenzie and Akim Demaille.

$ automake --version
automake (GNU automake) 1.11.1
Copyright (C) 2009 Free Software Foundation, Inc.
License GPLv2+: GNU GPL version 2 or later
<http://gnu.org/licenses/gpl-2.0.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.

Written by Tom Tromey <tromey@××××××.com>
       and Alexandre Duret-Lutz <adl@×××.org>.
oogasawa@t262:~/local/src (2012-11-17 01:47:33)
$ libtools --version
-bash: libtools: command not found
oogasawa@t262:~/local/src (2012-11-17 01:47:43)
$ libtool --version
ltmain.sh (GNU libtool) 2.2.6b
Written by Gordon Matzigkeit <gord@××××××××××.edu>, 1996

Copyright (C) 2008 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.


>
>> >>> Verifying ebuild manifests
>>
>> !!! Digest verification failed:
>> !!! /lustre2/home/oogasawa/gentoo/usr/portage/sys-devel/binutils-config/files/binutils-config-3
>> !!! Reason: Filesize does not match recorded size
>> !!! Got: 14659
>> !!! Expected: 14623
>>
>> Would someone tell me how to resolve this error?
>> I tried emerge --sync command, but the same error occurred again.
>
> r61465 | heroxbd | 2012-11-14 11:59:54 +0100 (Wed, 14 Nov 2012) | 4
> lines
>
> Partially reverting c60361. the "cd" is need by "for x in lib* ; do" ten
> lines below.
>
> http://overlays.gentoo.org/proj/alt/changeset/60361
>
>
> That commit didn't use repoman, and hence broke the Manifest :((((
>
>
> --
> Fabian Groffen
> Gentoo on a different level

Thank's again for answering my question. I'll try it.

---
Osamu Ogasawara
National Institute of Genetics
Japan