Gentoo Archives: gentoo-alt

From: Ricky Egeland <ricky.egeland@×××××.com>
To: gentoo-alt@l.g.o
Subject: [gentoo-alt] emerge gcc 4.4.x/4.5.x fails on CentOS 5.5
Date: Thu, 12 May 2011 15:29:50
Message-Id: 92640C1F-77E1-4400-9E42-CB68DB078E2E@gmail.com
1 I am seeing the following when bootstrapping on CentOS 5.5 and trying `emerge -u system`.
2
3 ===
4 ...
5 /usr/include/bits/string3.h:160: multiple definition of `stpncpy'
6 .libs/backtrace.o:/usr/include/bits/string3.h:160: first defined here
7 .libs/in_unpack_generic.o: In function `wcstombs':
8 /usr/include/bits/stdlib.h:114: multiple definition of `wcstombs'
9 .libs/backtrace.o:/usr/include/bits/stdlib.h:114: first defined here
10 .libs/in_unpack_generic.o: In function `mbstowcs':
11 /usr/include/bits/stdlib.h:95: multiple definition of `mbstowcs'
12 .libs/backtrace.o:/usr/include/bits/stdlib.h:95: first defined here
13 .libs/in_unpack_generic.o: In function `wctomb':
14 /usr/include/bits/stdlib.h:74: multiple definition of `wctomb'
15 .libs/backtrace.o:/usr/include/bits/stdlib.h:74: first defined here
16 .libs/in_unpack_generic.o: In function `ptsname_r':
17 /usr/include/bits/stdlib.h:53: multiple definition of `ptsname_r'
18 .libs/backtrace.o:/usr/include/bits/stdlib.h:53: first defined here
19 .libs/in_unpack_generic.o: In function `realpath':
20 /usr/include/bits/stdlib.h:37: multiple definition of `realpath'
21 .libs/backtrace.o:/usr/include/bits/stdlib.h:37: first defined here
22 .libs/in_unpack_generic.o: In function `fgets_unlocked':
23 /usr/include/bits/stdio2.h:125: multiple definition of `fgets_unlocked'
24 .libs/backtrace.o:/usr/include/bits/stdio2.h:125: first defined here
25 .libs/in_unpack_generic.o: In function `fgets':
26 /usr/include/bits/stdio2.h:109: multiple definition of `fgets'
27 .libs/backtrace.o:/usr/include/bits/stdio2.h:109: first defined here
28 .libs/in_unpack_generic.o: In function `gets':
29 /usr/include/bits/stdio2.h:94: multiple definition of `gets'
30 .libs/backtrace.o:/usr/include/bits/stdio2.h:94: first defined here
31 collect2: ld returned 1 exit status
32 make[3]: *** [libgfortran.la] Error 1make[3]: Leaving directory `/home/egeland/gentoo-prefix/var/tmp/portage/sys-deve
33 l/gcc-4.4.4-r2/work/build/x86_64-pc-linux-gnu/libgfortran'
34 make[2]: *** [all] Error 2make[2]: Leaving directory `/home/egeland/gentoo-prefix/var/tmp/portage/sys-deve
35 l/gcc-4.4.4-r2/work/build/x86_64-pc-linux-gnu/libgfortran'
36 make[1]: *** [all-target-libgfortran] Error 2
37 make[1]: Leaving directory `/home/egeland/gentoo-prefix/var/tmp/portage/sys-devel/gcc-4.4.4-r2/work/build'
38 make: *** [bootstrap-lean] Error 2
39 emake failed
40 * ERROR: sys-devel/gcc-4.4.4-r2 failed (compile phase):
41 * emake failed with bootstrap-lean
42 *
43 * Call stack:
44 * ebuild.sh, line 62: Called call-ebuildshell 'src_compile'
45 * environment, line 766: Called src_compile
46 * environment, line 5048: Called gcc_src_compile
47 * environment, line 3159: Called gcc_do_make
48 * environment, line 2930: Called die
49 * The specific snippet of code:
50 * emake LDFLAGS="${LDFLAGS}" STAGE1_CFLAGS="${STAGE1_CFLAGS}" LIBPATH="${EPREFIX}${LIBPATH}" BOOT_CFLAGS="${BOOT_CFLAGS}" ${GCC_MAKE_TARGET} || die "emake failed with ${GCC_MAKE_TARGET}";
51 *
52 * If you need support, post the output of 'emerge --info =sys-devel/gcc-4.4.4-r2',
53 * the complete build log and the output of 'emerge -pqv =sys-devel/gcc-4.4.4-r2'.
54 * The complete build log is located at '/home/egeland/gentoo-prefix/var/tmp/portage/sys-devel/gcc-4.4.4-r2/temp/build.log'.
55 * The ebuild environment file is located at '/home/egeland/gentoo-prefix/var/tmp/portage/sys-devel/gcc-4.4.4-r2/temp/environment'.
56 * S: '/home/egeland/gentoo-prefix/var/tmp/portage/sys-devel/gcc-4.4.4-r2/work/build'
57 ===
58
59 This appears to be a closed bug:
60
61 https://bugs.gentoo.org/show_bug.cgi?id=289757
62
63 Which was declared fixed with gcc-4.5.2-r00.1, but I observed the same thing with that gcc version on my system.
64
65 My CentOS 5.5 base system does have multiple fortran-related packages already installed.
66
67 Trying gcc-4.5.2-r00.1 again now with USE=vanilla to confirm the workaround. Compiling...
68
69 See also http://archives.gentoo.org/gentoo-alt/msg_45fe4ddd90a35ee1fb9b6f91f745d249.xml
70
71 ===
72 % emerge --info \=sys-devel/gcc-4.4.4-r2
73 Portage 2.2.01.18252-prefix (prefix/linux/amd64, gcc-4.2.4, unavailable, 2.6.18-194.32.1.el5 x86_64)================================================================= System Settings=================================================================System uname: Linux-2.6.18-194.32.1.el5-x86_64-AMD_Phenom-tm-_II_X2_B55_Processor-with-redhat-5.5-FinalTimestamp of tree: Thu, 12 May 2011 13:39:52 +0000app-shells/bash: 4.2_p8dev-lang/python: 2.7.1-r1sys-devel/autoconf: 2.68sys-devel/automake: 1.11.1sys-devel/binutils: 2.21.51.0.7 sys-devel/gcc: 4.2.4-r01.2 sys-devel/gcc-config: 1.4.1-r00.2sys-devel/libtool: 2.4-r1sys-devel/make: 3.82virtual/os-headers: 0Repositories: gentoo_prefixInstalled sets:ACCEPT_KEYWORDS="~amd64-linux" ACCEPT_LICENSE="* -@EULA"CBUILD="x86_64-pc-linux-gnu"
74 CFLAGS="-O2 -pipe"CHOST="x86_64-pc-linux-gnu"CONFIG_PROTECT="/etc"
75 CONFIG_PROTECT_MASK="/etc/env.d /etc/gconf /etc/portage /etc/terminfo"
76 CXXFLAGS="-O2 -pipe"DISTDIR="/home/egeland/gentoo-prefix/usr/portage/distfiles"FEATURES="assume-digests binpkg-logs collision-protect distlocks fixlafiles fixp
77 ackages news parallel-fetch preserve-libs protect-owned sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch"FFLAGS=""
78 GENTOO_MIRRORS="http://distfiles.gentoo.org"
79 LANG="en_US.UTF-8"
80 LDFLAGS="-Wl,-O1"
81 PKGDIR="/home/egeland/gentoo-prefix/usr/portage/packages"
82 PORTAGE_CONFIGROOT="/home/egeland/gentoo-prefix/"
83 PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
84 PORTAGE_TMPDIR="/home/egeland/gentoo-prefix/var/tmp"
85 PORTDIR="/home/egeland/gentoo-prefix/usr/portage"
86 PORTDIR_OVERLAY=""
87 SYNC="rsync://rsync.prefix.freens.org/gentoo-portage-prefix"
88 USE="amd64 berkdb bzip2 cli cracklib crypt cxx dri fortran gdbm iconv ipv6 mmx modules mudflap ncurses nls nptl nptlonly openmp pcre perl pppd prefix python readline session sse sse2 ssl sysfs tcpd unicode xorg zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" PHP_TARGETS="php5-3" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="fbdev glint intel mach64 mga neomagic nouveau nv r128 radeon savage sis tdfx trident vesa via vmware dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
89 Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, LINGUAS, MAKEOPTS, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
90 ===

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[gentoo-alt] Re: emerge gcc 4.4.x/4.5.x fails on CentOS 5.5 Ricky Egeland <ricky.egeland@×××××.com>