| 1 |
Justin Bronder wrote: |
| 2 |
> On 12/06/08 11:28 -0700, Bryan Green wrote: |
| 3 |
> |
| 4 |
>> Hello, |
| 5 |
>> |
| 6 |
>> I'm beginning to give empi/eselect-mpi a try. Bravo, Justin, for making |
| 7 |
>> these! |
| 8 |
>> |
| 9 |
> |
| 10 |
> Thanks for trying them out, I'm hoping someone else finds them as useful as I |
| 11 |
> have. |
| 12 |
> |
| 13 |
It is planned to be part of the Gentoo Clustering LiveCD ;) |
| 14 |
> |
| 15 |
>> I've run into one bug in eselect-mpi that effects csh users (a popular |
| 16 |
>> shell where I work). There is simply one setenv line that has bash syntax |
| 17 |
>> rather than csh syntax. I already submitted a bug: its bug 226105. |
| 18 |
>> Here is the patch to fix it: |
| 19 |
>> |
| 20 |
>> ================================================ |
| 21 |
>> --- files/mpi.eselect-0.0.3 (revision 1137) |
| 22 |
>> +++ files/mpi.eselect-0.0.3 (working copy) |
| 23 |
>> @@ -161,7 +161,7 @@ |
| 24 |
>> setenv PATH "${binpath}" |
| 25 |
>> setenv MANPATH "${manpath}" |
| 26 |
>> setenv LD_LIBRARY_PATH "${lld}" |
| 27 |
>> -setenv ESELECT_MPI_IMP="${1}" |
| 28 |
>> +setenv ESELECT_MPI_IMP "${1}" |
| 29 |
>> EOF |
| 30 |
>> |
| 31 |
>> echo "Remember to source ${user_ev_sh} or ${user_ev_csh}" |
| 32 |
>> ================================================ |
| 33 |
>> |
| 34 |
> |
| 35 |
> Fixed in eselect-0.0.3-r1. Also found another mistake when setting PATH for |
| 36 |
> c shells and fixed that as well. |
| 37 |
> |
| 38 |
> |
| 39 |
>> Also, in the README file, the for loop in step 6 is incorrect: |
| 40 |
>> |
| 41 |
>> for i in $(ls ${HOME}/.env.d/*); do |
| 42 |
>> source ${HOME}/.env.d/${i} |
| 43 |
>> done |
| 44 |
>> |
| 45 |
>> Results in: |
| 46 |
>> |
| 47 |
>> -bash: /home/bgreen/.env.d//home/bgreen/.env.d/mpi.csh: No such file or directory |
| 48 |
>> -bash: /home/bgreen/.env.d//home/bgreen/.env.d/mpi.sh: No such file or directoryA |
| 49 |
>> |
| 50 |
> |
| 51 |
> Also fixed. You might also want to check out the doc I've been working on |
| 52 |
> lately, http://dev.gentoo.org/~jsbronder/empi.xml. Hopefully it's a little |
| 53 |
> more up to date. |
| 54 |
> |
| 55 |
Have to remember that one ;) |
| 56 |
> |
| 57 |
>> On the system where I'm using empi, I've created files in /etc/profile.d to |
| 58 |
>> source the user's .env.d files when they log in. What do you think about |
| 59 |
>> having the eselect-mpi ebuild install these, so mpi users dont have to do |
| 60 |
>> that part manually? They would instead just have to source /etc/profile or |
| 61 |
>> /etc/csh.login after running 'eselect mpi'. |
| 62 |
>> |
| 63 |
> |
| 64 |
> Love it, I had not even thought of using this mechanism before even though I |
| 65 |
> should have. It will also simplify switching from an mpi environment to one |
| 66 |
> without it. I'll try to get something checked into the overlay soon, |
| 67 |
> shouldn't be more than a few days.< |
| 68 |
> |
| 69 |
Keep us posted because I will definitely want that version! |
| 70 |
> |
| 71 |
>> Here are my versions of the files in /etc/profile.d: |
| 72 |
>> |
| 73 |
>> ============== |
| 74 |
>> mpi-config.sh |
| 75 |
>> ============== |
| 76 |
>> if [ -d ${HOME}/.env.d ]; then |
| 77 |
>> for i in ${HOME}/.env.d/*.sh ; do |
| 78 |
>> . "${i}" |
| 79 |
>> done |
| 80 |
>> unset i |
| 81 |
>> fi |
| 82 |
>> |
| 83 |
>> ============== |
| 84 |
>> mpi-config.csh |
| 85 |
>> ============== |
| 86 |
>> if ( -d ${HOME}/.env.d ) then |
| 87 |
>> set nonomatch |
| 88 |
>> foreach i ( ${HOME}/.env.d/*.csh ) |
| 89 |
>> source ${i} |
| 90 |
>> end |
| 91 |
>> unset i nonomatch |
| 92 |
>> endif |
| 93 |
>> |
| 94 |
>> ============== |
| 95 |
>> |
| 96 |
>> -bryan |
| 97 |
>> |
| 98 |
> |
| 99 |
> Thanks again for testing and your comments, they're much appreciated. |
| 100 |
> |
| 101 |
Yeah, thanks you both, multi-mpi-on-1-system has always plagued me too ;) |
Archives