[gentoo-commits] proj/sci:master commit in: sci-chemistry/openbabel/files/, sci-chemistry/openbabel-python/files/, ...

[Justin Lecher]

commit:     e30b4c139db3db8f0fc6d3086d21896f12238960
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sun Mar  4 10:31:15 2012 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Mar  4 10:31:15 2012 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=e30b4c13

Moved to tree

---
 sci-chemistry/openbabel-perl/ChangeLog             |   10 ---
 .../files/openbabel-perl-2.3.1-makefile.patch      |    9 ---
 sci-chemistry/openbabel-perl/metadata.xml          |   12 ----
 .../openbabel-perl/openbabel-perl-2.3.1.ebuild     |   69 --------------------
 sci-chemistry/openbabel-python/ChangeLog           |   10 ---
 .../openbabel-python-2.3.1-system_openbabel.patch  |   15 ----
 sci-chemistry/openbabel-python/metadata.xml        |   12 ----
 .../openbabel-python/openbabel-python-2.3.1.ebuild |   53 ---------------
 sci-chemistry/openbabel/ChangeLog                  |   11 ---
 .../files/openbabel-2.3.0-test_lib_path.patch      |   12 ----
 sci-chemistry/openbabel/metadata.xml               |   14 ----
 sci-chemistry/openbabel/openbabel-2.3.1.ebuild     |   69 --------------------
 12 files changed, 0 insertions(+), 296 deletions(-)

diff --git a/sci-chemistry/openbabel-perl/ChangeLog b/sci-chemistry/openbabel-perl/ChangeLog
deleted file mode 100644
index b6a2102..0000000
--- a/sci-chemistry/openbabel-perl/ChangeLog
+++ /dev/null
@@ -1,10 +0,0 @@
-# ChangeLog for sci-chemistry/openbabel-perl
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
-*openbabel-perl-2.3.1 (10 Nov 2011)
-
-  10 Nov 2011; Reinis Danne <rei4dan@×××××.com> +openbabel-perl-2.3.1.ebuild,
-  +files/openbabel-perl-2.3.1-makefile.patch, +metadata.xml:
-  Version bump to 2.3.1
-

diff --git a/sci-chemistry/openbabel-perl/files/openbabel-perl-2.3.1-makefile.patch b/sci-chemistry/openbabel-perl/files/openbabel-perl-2.3.1-makefile.patch
deleted file mode 100644
index 88248b4..0000000
--- a/sci-chemistry/openbabel-perl/files/openbabel-perl-2.3.1-makefile.patch
+++ /dev/null
@@ -1,9 +0,0 @@
---- scripts/perl/Makefile.PL
-+++ scripts/perl/Makefile.PL
-@@ -37,5 +37,6 @@     'LDFROM'    => $ldfrom,
-     'CC'        => $CC,
-     'LD'        => '$(CC)',
-     'INC'       => '-I../../include -I'.$cmakesrcdir.'/include',
-+    'DESTDIR'   => @ENV{"D"},
-     'OBJECT'    => 'openbabel-perl.o'
- );

diff --git a/sci-chemistry/openbabel-perl/metadata.xml b/sci-chemistry/openbabel-perl/metadata.xml
deleted file mode 100644
index 433cfe8..0000000
--- a/sci-chemistry/openbabel-perl/metadata.xml
+++ /dev/null
@@ -1,12 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<herd>sci-chemistry</herd>
-	<longdescription>
-		OpenBabel is a chemical toolbox designed to speak the many languages of
-		chemical data. It's an open, collaborative project allowing anyone to
-		search, convert, analyze, or store data from molecular modeling, chemistry,
-		solid-state materials, biochemistry, or related areas. This package enables
-		to access OpenBabel library from Python programs.
-	</longdescription>
-</pkgmetadata>

diff --git a/sci-chemistry/openbabel-perl/openbabel-perl-2.3.1.ebuild b/sci-chemistry/openbabel-perl/openbabel-perl-2.3.1.ebuild
deleted file mode 100644
index 96f267f..0000000
--- a/sci-chemistry/openbabel-perl/openbabel-perl-2.3.1.ebuild
+++ /dev/null
@@ -1,69 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/openbabel-perl/openbabel-perl-2.3.0.ebuild,v 1.3 2011/03/29 06:00:42 jlec Exp $
-
-EAPI="3"
-
-inherit cmake-utils eutils perl-module
-
-DESCRIPTION="Perl bindings for OpenBabel"
-HOMEPAGE="http://openbabel.sourceforge.net/"
-SRC_URI="mirror://sourceforge/openbabel/openbabel-${PV}.tar.gz"
-
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-SLOT="0"
-LICENSE="GPL-2"
-IUSE=""
-
-RDEPEND="
-	dev-lang/perl
-	~sci-chemistry/openbabel-${PV}"
-DEPEND="${RDEPEND}
-	>=dev-lang/swig-2
-	dev-util/cmake"
-
-S="${WORKDIR}/openbabel-${PV}"
-
-src_prepare() {
-	epatch \
-		"${FILESDIR}/${P}-makefile.patch"
-}
-
-src_configure() {
-	local mycmakeargs="-DPERL_BINDINGS=ON"
-	mycmakeargs="${mycmakeargs}
-		-DRUN_SWIG=ON"
-	cmake-utils_src_configure
-}
-
-src_compile() {
-	cd "${WORKDIR}/${P}_build/scripts"
-	perl-module_src_prep
-	perl-module_src_compile
-}
-
-src_test() {
-	cd "${WORKDIR}/${P}_build/scripts"
-	emake test || die "make test failed"
-}
-
-src_install() {
-	cd "${WORKDIR}/${P}_build/scripts/perl"
-	perl-module_src_install
-}
-
-pkg_preinst() {
-	perl-module_pkg_preinst
-}
-
-pkg_postinst() {
-	perl-module_pkg_postinst
-}
-
-pkg_prerm() {
-	perl-module_pkg_prerm
-}
-
-pkg_postrm() {
-	perl-module_pkg_postrm
-}

diff --git a/sci-chemistry/openbabel-python/ChangeLog b/sci-chemistry/openbabel-python/ChangeLog
deleted file mode 100644
index 0378f55..0000000
--- a/sci-chemistry/openbabel-python/ChangeLog
+++ /dev/null
@@ -1,10 +0,0 @@
-# ChangeLog for sci-chemistry/openbabel-python
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
-*openbabel-python-2.3.1 (10 Nov 2011)
-
-  10 Nov 2011; Reinis Danne <rei4dan@×××××.com> +openbabel-python-2.3.1.ebuild,
-  +files/openbabel-python-2.3.1-system_openbabel.patch, +metadata.xml:
-  Version bump to 2.3.1
-

diff --git a/sci-chemistry/openbabel-python/files/openbabel-python-2.3.1-system_openbabel.patch b/sci-chemistry/openbabel-python/files/openbabel-python-2.3.1-system_openbabel.patch
deleted file mode 100644
index 6420bba..0000000
--- a/sci-chemistry/openbabel-python/files/openbabel-python-2.3.1-system_openbabel.patch
+++ /dev/null
@@ -1,15 +0,0 @@
---- scripts/python/setup.py
-+++ scripts/python/setup.py
-@@ -15,11 +15,7 @@
- 
- obExtension = Extension('_openbabel',
-                  [os.path.join(srcdir, "openbabel-python.cpp")],
--                 include_dirs=[os.path.join(srcdir, "..", "..", "include"),
--                               os.path.join("..", "include")],
--                 library_dirs=[os.path.join(srcdir, "..", "..", "lib"),
--                               os.path.join(srcdir, "..", "..", "lib64"),
--                               os.path.join("..", "lib")],
-+                 include_dirs=[os.path.join("/usr", "include", "openbabel-2.0")],
-                  libraries=['openbabel']
-                  )
- 

diff --git a/sci-chemistry/openbabel-python/metadata.xml b/sci-chemistry/openbabel-python/metadata.xml
deleted file mode 100644
index 433cfe8..0000000
--- a/sci-chemistry/openbabel-python/metadata.xml
+++ /dev/null
@@ -1,12 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<herd>sci-chemistry</herd>
-	<longdescription>
-		OpenBabel is a chemical toolbox designed to speak the many languages of
-		chemical data. It's an open, collaborative project allowing anyone to
-		search, convert, analyze, or store data from molecular modeling, chemistry,
-		solid-state materials, biochemistry, or related areas. This package enables
-		to access OpenBabel library from Python programs.
-	</longdescription>
-</pkgmetadata>

diff --git a/sci-chemistry/openbabel-python/openbabel-python-2.3.1.ebuild b/sci-chemistry/openbabel-python/openbabel-python-2.3.1.ebuild
deleted file mode 100644
index 0da030f..0000000
--- a/sci-chemistry/openbabel-python/openbabel-python-2.3.1.ebuild
+++ /dev/null
@@ -1,53 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/openbabel-python/openbabel-python-2.3.0.ebuild,v 1.7 2011/09/14 05:06:41 jlec Exp $
-
-EAPI="3"
-
-PYTHON_DEPEND="2"
-SUPPORT_PYTHON_ABIS="1"
-RESTRICT_PYTHON_ABIS="*-jython"
-PYTHON_MODNAME="openbabel.py pybel.py"
-
-inherit distutils eutils flag-o-matic
-
-DESCRIPTION="Python bindings for OpenBabel (including Pybel)"
-HOMEPAGE="http://openbabel.sourceforge.net/"
-SRC_URI="mirror://sourceforge/openbabel/openbabel-${PV}.tar.gz"
-
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-SLOT="0"
-LICENSE="GPL-2"
-IUSE=""
-
-RDEPEND="
-	dev-cpp/eigen:2
-	dev-libs/libxml2:2
-	!sci-chemistry/babel
-	~sci-chemistry/openbabel-${PV}
-	sys-libs/zlib"
-DEPEND="${RDEPEND}
-	>=dev-lang/swig-2"
-
-S="${WORKDIR}"/openbabel-${PV}
-
-DISTUTILS_SETUP_FILES=("scripts|python/setup.py")
-
-src_prepare() {
-	epatch \
-		"${FILESDIR}"/${P}-system_openbabel.patch
-
-	sed \
-		-e "s:/usr:${EPREFIX}/usr:g" \
-		-i ./scripts/python/setup.py || die
-
-	swig -python -c++ -small -O -templatereduce -naturalvar \
-		-I"${EPREFIX}/usr/include/openbabel-2.0" \
-		-o scripts/python/openbabel-python.cpp \
-		-DHAVE_EIGEN2 \
-		-outdir scripts/python \
-		scripts/openbabel-python.i \
-		|| die "Regeneration of openbabel-python.cpp failed"
-
-	append-cxxflags "$(pkg-config --cflags-only-I eigen2)"
-}

diff --git a/sci-chemistry/openbabel/ChangeLog b/sci-chemistry/openbabel/ChangeLog
deleted file mode 100644
index d05cfda..0000000
--- a/sci-chemistry/openbabel/ChangeLog
+++ /dev/null
@@ -1,11 +0,0 @@
-# ChangeLog for sci-chemistry/openbabel
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
-*openbabel-2.3.1 (10 Nov 2011)
-
-  10 Nov 2011; Reinis Danne <rei4dan@×××××.com>
-  +files/openbabel-2.3.0-test_lib_path.patch, +openbabel-2.3.1.ebuild,
-  +metadata.xml:
-  Version bump to 2.3.1
-

diff --git a/sci-chemistry/openbabel/files/openbabel-2.3.0-test_lib_path.patch b/sci-chemistry/openbabel/files/openbabel-2.3.0-test_lib_path.patch
deleted file mode 100644
index 014da6b..0000000
--- a/sci-chemistry/openbabel/files/openbabel-2.3.0-test_lib_path.patch
+++ /dev/null
@@ -1,12 +0,0 @@
-diff -ru old/openbabel-2.3.0/test/CMakeLists.txt new/openbabel-2.3.0/test/CMakeLists.txt
---- old/openbabel-2.3.0/test/CMakeLists.txt	2010-10-26 17:39:01.000000000 +0300
-+++ new/openbabel-2.3.0/test/CMakeLists.txt	2010-11-14 18:13:32.000000000 +0200
-@@ -2,7 +2,7 @@
- add_definitions(-DTESTDATADIR="\\"${CMAKE_SOURCE_DIR}/test/files/\\"")
- 
- # define FORMATDIR for location of format plugin binaries
--add_definitions(-DFORMATDIR="\\"${openbabel_BINARY_DIR}/lib/\\"")
-+add_definitions(-DFORMATDIR="\\"${openbabel_BINARY_DIR}/lib${LIB_SUFFIX}/\\"")
- 
- ###########################################################
- #  new tests using obtest.h

diff --git a/sci-chemistry/openbabel/metadata.xml b/sci-chemistry/openbabel/metadata.xml
deleted file mode 100644
index 7c0c529..0000000
--- a/sci-chemistry/openbabel/metadata.xml
+++ /dev/null
@@ -1,14 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-  <herd>sci-chemistry</herd>
-  <longdescription>
-    Open Babel is a chemical toolbox designed to speak the many languages of
-	chemical data. It's an open, collaborative project allowing anyone to
-	search, convert, analyze, or store data from molecular modeling, chemistry,
-	solid-state materials, biochemistry, or related areas.
-  </longdescription>
-  <use>
-    <flag name="wxwidgets">Build GUI.</flag>
-  </use>
-</pkgmetadata>

diff --git a/sci-chemistry/openbabel/openbabel-2.3.1.ebuild b/sci-chemistry/openbabel/openbabel-2.3.1.ebuild
deleted file mode 100644
index 89b1836..0000000
--- a/sci-chemistry/openbabel/openbabel-2.3.1.ebuild
+++ /dev/null
@@ -1,69 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/openbabel/openbabel-2.3.0.ebuild,v 1.5 2011/05/07 09:18:00 jlec Exp $
-
-EAPI="3"
-
-WX_GTK_VER="2.8"
-
-inherit cmake-utils eutils wxwidgets
-
-DESCRIPTION="Interconverts file formats used in molecular modeling"
-HOMEPAGE="http://openbabel.sourceforge.net/"
-SRC_URI="mirror://sourceforge/openbabel/${P}.tar.gz"
-
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-SLOT="0"
-LICENSE="GPL-2"
-IUSE="doc perl python wxwidgets"
-
-RDEPEND="
-	dev-cpp/eigen:2
-	dev-libs/libxml2:2
-	!sci-chemistry/babel
-	sci-libs/inchi
-	sys-libs/zlib
-	wxwidgets? ( x11-libs/wxGTK:2.8[X] )"
-DEPEND="${RDEPEND}
-	>=dev-util/cmake-2.4.8"
-PDEPEND="
-	perl? ( sci-chemistry/openbabel-perl )
-	python? ( sci-chemistry/openbabel-python )"
-
-DOCS="AUTHORS ChangeLog NEWS README THANKS doc/*.inc doc/README* doc/*.mol2"
-
-src_prepare() {
-	epatch \
-		"${FILESDIR}"/${PN}-2.3.0-test_lib_path.patch
-}
-
-src_configure() {
-	local mycmakeargs=""
-	mycmakeargs="${mycmakeargs}
-		-DOPENBABEL_USE_SYSTEM_INCHI=ON
-		$(cmake-utils_use wxwidgets BUILD_GUI)"
-
-	cmake-utils_src_configure
-}
-
-src_install() {
-	dohtml doc/{*.html,*.png} || die
-	if use doc ; then
-		insinto /usr/share/doc/${PF}/API/html
-		doins doc/API/html/* || die
-	fi
-	cmake-utils_src_install
-}
-
-src_test() {
-	local mycmakeargs=""
-	mycmakeargs="${mycmakeargs}
-		-DOPENBABEL_USE_SYSTEM_INCHI=ON
-		-DPYTHON_EXECUTABLE=false
-		$(cmake-utils_use wxwidgets BUILD_GUI)
-		$(cmake-utils_use_enable test TESTS)"
-
-	cmake-utils_src_configure
-	cmake-utils_src_compile
-	cmake-utils_src_test
-}