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commit: 3f6ffb94adc1d3f7209d7ac33edb1fe0165bd487 |
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Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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AuthorDate: Wed Jan 24 20:58:04 2018 +0000 |
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Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> |
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CommitDate: Wed Jan 24 20:58:04 2018 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=3f6ffb94 |
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|
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sci-biology/nanopolish: update compile procedure and deps |
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|
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Package-Manager: Portage-2.3.19, Repoman-2.3.6 |
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sci-biology/nanopolish/nanopolish-9999.ebuild | 6 +++--- |
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1 file changed, 3 insertions(+), 3 deletions(-) |
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diff --git a/sci-biology/nanopolish/nanopolish-9999.ebuild b/sci-biology/nanopolish/nanopolish-9999.ebuild |
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index 92c5f41d3..cea5cce27 100644 |
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--- a/sci-biology/nanopolish/nanopolish-9999.ebuild |
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+++ b/sci-biology/nanopolish/nanopolish-9999.ebuild |
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@@ -1,4 +1,4 @@ |
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-# Copyright 1999-2017 Gentoo Foundation |
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+# Copyright 1999-2018 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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|
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EAPI=6 |
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@@ -21,7 +21,7 @@ IUSE="" |
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# The bundled version of htslib in is 1.2.1 as of now although 1.5.1 already exists |
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DEPEND=">=sci-libs/hdf5-1.8.14[threads] |
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>=dev-cpp/eigen-3.2.5 |
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- sci-libs/htslib:0 |
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+ >=sci-libs/htslib-1.4:0 |
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sci-libs/fast5" |
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RDEPEND="${DEPEND} |
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sci-biology/biopython" |
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@@ -34,7 +34,7 @@ src_prepare(){ |
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src_compile(){ |
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# >=gcc-4.8 but <gcc-7 is needed |
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# https://github.com/jts/nanopolish/issues/145 |
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- emake HDF5="noinstall" EIGEN="nofetch" HTS_LIB=-lhts HTS_INCLUDE=-I/usr/include/htslib EIGEN_INCLUDE=-I/usr/include/eigen3 # TODO: FAST5_INCLUDE=-I/usr/include/fast5 |
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+ emake HDF5="noinstall" EIGEN="noinstall" HTS="noinstall" HTS_LIB=-lhts HTS_INCLUDE=-I/usr/include/htslib EIGEN_INCLUDE=-I/usr/include/eigen3 # TODO: FAST5_INCLUDE=-I/usr/include/fast5 |
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} |
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|
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src_install(){ |
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