| 1 |
commit: 8cc7f9a89b3eb03af30f812cfc393f43949e6c5e |
| 2 |
Author: Justin Lecher <jlec <AT> gentoo <DOT> org> |
| 3 |
AuthorDate: Sun Sep 20 10:39:08 2015 +0000 |
| 4 |
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> |
| 5 |
CommitDate: Sun Sep 20 10:39:08 2015 +0000 |
| 6 |
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=8cc7f9a8 |
| 7 |
|
| 8 |
sci-chemistry/probe: Drop old |
| 9 |
|
| 10 |
obsoletes |
| 11 |
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=556806 |
| 12 |
|
| 13 |
Package-Manager: portage-2.2.20.1 |
| 14 |
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org> |
| 15 |
|
| 16 |
sci-chemistry/probe/Manifest | 1 - |
| 17 |
.../probe/files/2.12.110413-as-needed.patch | 38 ---------------------- |
| 18 |
sci-chemistry/probe/probe-2.12.110413.ebuild | 38 ---------------------- |
| 19 |
3 files changed, 77 deletions(-) |
| 20 |
|
| 21 |
diff --git a/sci-chemistry/probe/Manifest b/sci-chemistry/probe/Manifest |
| 22 |
index f5dd922..a22c524 100644 |
| 23 |
--- a/sci-chemistry/probe/Manifest |
| 24 |
+++ b/sci-chemistry/probe/Manifest |
| 25 |
@@ -1,2 +1 @@ |
| 26 |
-DIST probe.2.12.110413.src.zip 262460 SHA256 90cd0a693683958a8ac05d13a47c2b464f2939df24369bf5c568f59913756de4 SHA512 ac6a92f1666d1819c0dede5ea97113c9e03271c42b829d88a2b65041dec7f853441fc61e94e48782078884a9a69c1043432ca3576768d31bfe9190d3ea1da4c8 WHIRLPOOL f6e6ec43016d14114ae5cbfdbfd1cdb5bdf0c6a1c34742b0fef0cfe5ee39409a41b4b2127fbefe526d66d99c33b91ef5e3ea4c9de33784f9ea493700e8bc8784 |
| 27 |
DIST probe.2.13.110909.src.zip 131063 SHA256 df14b76d27a7c43b2b57c315d0ad71cdf6acc7943c43195a797162be7816fa71 SHA512 5efa066873d0e139da66bf8edb541fe42df94e99cab171ad8d06a8a6f5caada982ef5b18481e748b224dbed86f63c99237d04ecd107c82855b44de91fb6d2b16 WHIRLPOOL 12f6fefe1b03b71268f39fa3aa7ad796230c76c2e029b8dc86955abd43c8e3f09f7591f84cd79c7ba11037d5b323c922ddf36abf6911d556981f5cc21378912f |
| 28 |
|
| 29 |
diff --git a/sci-chemistry/probe/files/2.12.110413-as-needed.patch b/sci-chemistry/probe/files/2.12.110413-as-needed.patch |
| 30 |
deleted file mode 100644 |
| 31 |
index 9536862..0000000 |
| 32 |
--- a/sci-chemistry/probe/files/2.12.110413-as-needed.patch |
| 33 |
+++ /dev/null |
| 34 |
@@ -1,38 +0,0 @@ |
| 35 |
- Makefile | 13 ++++++------- |
| 36 |
- 1 files changed, 6 insertions(+), 7 deletions(-) |
| 37 |
- |
| 38 |
-diff --git a/Makefile b/Makefile |
| 39 |
-index e6a740e..8f74d6a 100644 |
| 40 |
---- a/Makefile |
| 41 |
-+++ b/Makefile |
| 42 |
-@@ -1,14 +1,12 @@ |
| 43 |
--MACHINEFLAGS = |
| 44 |
--CFLAGS = $(MACHINEFLAGS) |
| 45 |
--LFLAGS = -lm $(MACHINEFLAGS) |
| 46 |
-+LIBS = -lm |
| 47 |
- OBJLIST = dots.o abin.o readPDBrecs.o geom3d.o utility.o select.o \ |
| 48 |
-- parse.o atomprops.o stdconntable.o autobondrot.o |
| 49 |
-+ parse.o atomprops.o stdconntable.o autobondrot.o hybrid_36_c.o |
| 50 |
- |
| 51 |
- .c.o: |
| 52 |
-- cc -c $*.c $(CFLAGS) |
| 53 |
-+ $(CC) $(CFLAGS) -c $*.c |
| 54 |
- |
| 55 |
- probe: probe.o $(OBJLIST) |
| 56 |
-- cc -o $@ probe.o $(OBJLIST) $(LFLAGS) |
| 57 |
-+ $(CC) $(CFLAGS) $(LDFLAGS) -o $@ probe.o $(OBJLIST) $(LIBS) |
| 58 |
- |
| 59 |
- clean: |
| 60 |
- @rm -f *.o *.ckp |
| 61 |
-@@ -30,9 +28,10 @@ parse.o: ./parse.h ./utility.h parse.c |
| 62 |
- probe.o: ./abin.h ./atomprops.h ./autobondrot.h ./dots.h ./geom3d.h \ |
| 63 |
- ./parse.h ./probe.h ./readPDBrecs.h ./select.h \ |
| 64 |
- ./stdconntable.h ./utility.h probe.c |
| 65 |
--readPDBrecs.o: ./geom3d.h ./readPDBrecs.h ./utility.h readPDBrecs.c |
| 66 |
-+readPDBrecs.o: ./geom3d.h ./readPDBrecs.h ./utility.h ./hybrid_36_c.h readPDBrecs.c |
| 67 |
- select.o: ./abin.h ./atomprops.h ./geom3d.h ./parse.h ./select.h \ |
| 68 |
- ./stdconntable.h ./utility.h select.c |
| 69 |
- stdconntable.o: ./stdconntable.h stdconntable.c |
| 70 |
- utility.o: utility.c |
| 71 |
-+hybrid_36_c.o: ./hybrid_36_c.h hybrid_36_c.c |
| 72 |
- # DO NOT DELETE THIS 2nd LINE -- make depend uses it |
| 73 |
|
| 74 |
diff --git a/sci-chemistry/probe/probe-2.12.110413.ebuild b/sci-chemistry/probe/probe-2.12.110413.ebuild |
| 75 |
deleted file mode 100644 |
| 76 |
index bb0a36a..0000000 |
| 77 |
--- a/sci-chemistry/probe/probe-2.12.110413.ebuild |
| 78 |
+++ /dev/null |
| 79 |
@@ -1,38 +0,0 @@ |
| 80 |
-# Copyright 1999-2012 Gentoo Foundation |
| 81 |
-# Distributed under the terms of the GNU General Public License v2 |
| 82 |
-# $Id$ |
| 83 |
- |
| 84 |
-EAPI=4 |
| 85 |
- |
| 86 |
-inherit eutils toolchain-funcs |
| 87 |
- |
| 88 |
-MY_P="${PN}.${PV}" |
| 89 |
- |
| 90 |
-DESCRIPTION="Evaluates atomic packing within or between molecules" |
| 91 |
-HOMEPAGE="http://kinemage.biochem.duke.edu/software/probe.php" |
| 92 |
-SRC_URI="http://kinemage.biochem.duke.edu/downloads/software/probe/${MY_P}.src.zip" |
| 93 |
- |
| 94 |
-SLOT="0" |
| 95 |
-LICENSE="richardson" |
| 96 |
-KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos" |
| 97 |
-IUSE="" |
| 98 |
- |
| 99 |
-RDEPEND="" |
| 100 |
-DEPEND="${RDEPEND} |
| 101 |
- app-arch/unzip" |
| 102 |
- |
| 103 |
-S="${WORKDIR}"/trunk |
| 104 |
- |
| 105 |
-src_prepare() { |
| 106 |
- epatch "${FILESDIR}"/${PV}-as-needed.patch |
| 107 |
- # Respect CC |
| 108 |
- sed -i \ |
| 109 |
- -e 's:cc:$(CC):g' \ |
| 110 |
- "${S}"/Makefile || die |
| 111 |
- tc-export CC |
| 112 |
-} |
| 113 |
- |
| 114 |
-src_install() { |
| 115 |
- dobin "${S}"/probe |
| 116 |
- dodoc "${S}"/README* |
| 117 |
-} |
Archives