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commit: e26cb1509794089cfcaf22cbead79430ad10cbcc |
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Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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AuthorDate: Sun Mar 23 18:25:19 2014 +0000 |
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Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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CommitDate: Sun Mar 23 18:25:19 2014 +0000 |
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URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=e26cb150 |
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|
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sci-biology/VarScan: a new package with some classes and no INSTALL docs, needs help from java team for sure |
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|
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--- |
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sci-biology/VarScan/VarScan-2.3.6.ebuild | 22 ++++++++++++++++++++++ |
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1 file changed, 22 insertions(+) |
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|
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diff --git a/sci-biology/VarScan/VarScan-2.3.6.ebuild b/sci-biology/VarScan/VarScan-2.3.6.ebuild |
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new file mode 100644 |
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index 0000000..1051f71 |
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--- /dev/null |
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+++ b/sci-biology/VarScan/VarScan-2.3.6.ebuild |
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@@ -0,0 +1,22 @@ |
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+# Copyright 1999-2014 Gentoo Foundation |
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+# Distributed under the terms of the GNU General Public License v2 |
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+# $Header: $ |
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+ |
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+EAPI=5 |
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+ |
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+inherit java-pkg-2 |
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+ |
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+DESCRIPTION="Variant detection (germline, multi-sample, somatic mutations, somatic copy number alterations (CNA)), SNP calls" |
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+HOMEPAGE="http://varscan.sourceforge.net/" |
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+SRC_URI="http://downloads.sourceforge.net/project/varscan/VarScan.v2.3.6.jar" |
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+ |
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+LICENSE="Non-profit-OSL-3.0" |
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+SLOT="0" |
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+KEYWORDS="" |
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+IUSE="" |
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+ |
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+DEPEND=" |
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+ >=virtual/jdk-1.5 |
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+ dev-java/ant-core" |
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+RDEPEND="${DEPEND} |
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+ >=virtual/jre-1.5" |
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