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commit: aea4f8147ac23b904f17d3890b398d5fb30c9eee |
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Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> |
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AuthorDate: Thu Jan 27 19:08:10 2022 +0000 |
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Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> |
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CommitDate: Thu Jan 27 19:08:36 2022 +0000 |
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URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=aea4f814 |
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|
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sci-biology/augustus: add version 3.4.0 |
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|
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Closes: https://bugs.gentoo.org/515996 |
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Package-Manager: Portage-3.0.30, Repoman-3.0.3 |
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Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org> |
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|
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sci-biology/augustus/Manifest | 1 + |
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sci-biology/augustus/augustus-3.4.0.ebuild | 47 ++++++++++++++++++++++++++++++ |
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2 files changed, 48 insertions(+) |
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|
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diff --git a/sci-biology/augustus/Manifest b/sci-biology/augustus/Manifest |
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index 7d0b1e3689b4..7ddb67b5c888 100644 |
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--- a/sci-biology/augustus/Manifest |
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+++ b/sci-biology/augustus/Manifest |
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@@ -1 +1,2 @@ |
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+DIST augustus-3.4.0.tar.gz 221652100 BLAKE2B dfc8c98107f5a955f688f3d2976ca936faf2ef7004095f6b9d7c1902a36ca5d3c9aef59cab1b82b56cd5c2abc7b67195c5030111ed68557d53128814b1bf6bab SHA512 ca1df1016589f55527a883429edd5024cbc32c1b32036c81f9df5e0967a7d194f5b7a82109e924f380627427d9731caa478e63cad8cd804c01521aed76d8c4a6 |
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DIST augustus.2.5.5.tar.gz 70826249 BLAKE2B 3f3f1537c5c614f00298e1835eeb7bbe968987c3e0dee13299e1e26b4abf198d8635a93121b11722d2c90b63ff54cf153c72716d01c3ca033481bb54357b7bcf SHA512 33eb05d5c90200d2fc17026743d3a25e73aa3e217b8546f0bed4c94bcb460597d853377a67896e52e45ead5d736d13ed3b2c91b31fed8216da2920c825e8c20f |
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|
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diff --git a/sci-biology/augustus/augustus-3.4.0.ebuild b/sci-biology/augustus/augustus-3.4.0.ebuild |
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new file mode 100644 |
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index 000000000000..0608d11dee6c |
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--- /dev/null |
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+++ b/sci-biology/augustus/augustus-3.4.0.ebuild |
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@@ -0,0 +1,47 @@ |
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+# Copyright 1999-2022 Gentoo Authors |
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+# Distributed under the terms of the GNU General Public License v2 |
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+ |
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+EAPI=8 |
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+ |
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+DOCS_BUILDER="doxygen" |
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+DOCS_CONFIG_NAME="doxygen.conf" |
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+inherit docs |
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+ |
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+DESCRIPTION="Eukaryotic gene predictor" |
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+HOMEPAGE="https://bioinf.uni-greifswald.de/augustus/" |
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+SRC_URI="https://github.com/Gaius-Augustus/Augustus/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz" |
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+S="${WORKDIR}/${P^}" |
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+ |
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+LICENSE="Artistic" |
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+SLOT="0" |
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+KEYWORDS="~amd64 ~x86" |
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+ |
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+RDEPEND=" |
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+ dev-db/sqlite:3 |
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+ dev-db/mysql++ |
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+ dev-db/mysql-connector-c |
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+ dev-libs/boost:= |
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+ sci-biology/bamtools |
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+ sci-libs/gsl |
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+ sci-libs/htslib |
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+ sci-libs/suitesparse |
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+ sci-mathematics/lpsolve |
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+ sys-libs/zlib |
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+" |
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+DEPEND="${RDEPEND}" |
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+ |
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+src_compile() { |
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+ default |
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+ docs_compile |
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+} |
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+ |
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+src_install() { |
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+ einstalldocs |
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+ # from upstream Makefile install: |
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+ dodir "opt/${P}" |
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+ cp -a config bin scripts "${ED}/opt/${P}" || die |
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+ local file |
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+ for file in bin/*; do |
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+ dosym "../${P}/${file}" "/opt/${file}" |
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+ done |
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+} |