[gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/

[Marius Brehler]

commit:     a4d74bf5cf42a039a93e81264382eb3bb159b052
Author:     Matthias Maier <tamiko <AT> gentoo <DOT> org>
AuthorDate: Sat Jul  9 16:35:21 2016 +0000
Commit:     Marius Brehler <marbre <AT> linux <DOT> sungazer <DOT> de>
CommitDate: Sat Jul  9 16:35:21 2016 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=a4d74bf5

sci-mathematics/petsc: drop old

Package-Manager: portage-2.2.28

 sci-mathematics/petsc/petsc-3.6.0.ebuild | 247 ------------------------------
 sci-mathematics/petsc/petsc-3.6.3.ebuild | 247 ------------------------------
 sci-mathematics/petsc/petsc-3.7.0.ebuild | 255 -------------------------------
 3 files changed, 749 deletions(-)

diff --git a/sci-mathematics/petsc/petsc-3.6.0.ebuild b/sci-mathematics/petsc/petsc-3.6.0.ebuild
deleted file mode 100644
index 58ff3bd..0000000
--- a/sci-mathematics/petsc/petsc-3.6.0.ebuild
+++ /dev/null
@@ -1,247 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit eutils flag-o-matic fortran-2 python-any-r1 toolchain-funcs versionator
-
-MY_P="${PN}-$(replace_version_separator _ -)"
-
-DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation"
-HOMEPAGE="http://www.mcs.anl.gov/petsc/"
-SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${MY_P}.tar.gz"
-
-LICENSE="petsc"
-SLOT="0"
-KEYWORDS="~x86 ~amd64"
-IUSE="afterimage boost complex-scalars cxx debug doc fftw
-	fortran hdf5 hypre mpi mumps scotch sparse superlu threads X"
-# Failed: imagemagick metis
-
-# hypre and superlu curretly exclude each other due to missing linking to hypre
-# if both are enabled
-REQUIRED_USE="
-	afterimage? ( X )
-	hdf5? ( mpi )
-	hypre? ( cxx mpi )
-	mumps? ( mpi scotch )
-	scotch? ( mpi )
-	^^ ( hypre superlu )
-"
-#	imagemagick? ( X )
-
-RDEPEND="
-	virtual/blas
-	virtual/lapack
-	afterimage? ( media-libs/libafterimage )
-	boost? ( dev-libs/boost )
-	fftw? ( sci-libs/fftw:3.0[mpi?] )
-	hdf5? ( sci-libs/hdf5[mpi?] )
-	hypre? ( >=sci-libs/hypre-2.8.0b[mpi?] )
-	mpi? ( virtual/mpi[cxx?,fortran?] )
-	mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack )
-	scotch? ( sci-libs/scotch[mpi?] )
-	sparse? ( sci-libs/suitesparse >=sci-libs/cholmod-1.7.0 )
-	superlu? ( sci-libs/superlu )
-	X? ( x11-libs/libX11 )
-"
-#	metis? ( sci-libs/parmetis )
-#	imagemagick? ( media-gfx/imagemagick )
-
-DEPEND="${RDEPEND}
-	${PYTHON_DEPS}
-	virtual/pkgconfig
-	dev-util/cmake
-"
-# cmake is used for parallel building
-# in some configuration setups, legacy build is used (slow)
-
-#
-# PETSc does not want its Makefiles to be invoked with anything higher than
-# -j1. The underlying build system does automatically invoke a parallel
-# build. This might not be what you want, but *hey* not your choice.
-#
-MAKEOPTS="${MAKEOPTS} -j1"
-
-S="${WORKDIR}/${MY_P}"
-
-src_prepare() {
-	epatch \
-		"${FILESDIR}"/${P%_*}-disable-rpath.patch \
-		"${FILESDIR}"/${P%_*}-fix_sandbox_violation.patch
-
-	sed -i -e 's%/usr/bin/env python%/usr/bin/env python2%' configure || die
-}
-
-src_configure() {
-	# bug 548498
-	# PETSc runs mpi processes during configure that result in a sandbox
-	# violation by trying to open /proc/mtrr rw. This is not easy to
-	# mitigate because it happens in libpciaccess.so called by libhwloc.so,
-	# which is used by libmpi.so.
-	addpredict /proc/mtrr
-
-	# petsc uses --with-blah=1 and --with-blah=0 to en/disable options
-	petsc_enable() {
-		use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0"
-	}
-	# add external library:
-	# petsc_with use_flag libname libdir
-	# petsc_with use_flag libname include linking_libs
-	petsc_with() {
-		local myuse p=${2:-${1}}
-		if use ${1}; then
-			myuse="--with-${p}=1"
-			if [[ $# -ge 4 ]]; then
-				myuse="${myuse} --with-${p}-include=${EPREFIX}${3}"
-				shift 3
-				myuse="${myuse} --with-${p}-lib=$@"
-			else
-				myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}"
-			fi
-		else
-			myuse="--with-${p}=0"
-		fi
-		echo ${myuse}
-	}
-
-	# select between configure options depending on use flag
-	petsc_select() {
-		use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4"
-	}
-
-	local mylang
-	local myopt
-
-	use cxx && mylang="cxx" || mylang="c"
-	use debug && myopt="debug" || myopt="opt"
-
-	# environmental variables expected by petsc during build
-	export PETSC_DIR="${S}"
-	export PETSC_ARCH="linux-gnu-${mylang}-${myopt}"
-
-	if use debug; then
-		strip-flags
-		filter-flags -O*
-	fi
-
-	# C Support on Cxx builds is enabled if possible
-	# i.e. when not using complex scalars
-	# (no complex type for both available at the same time)
-
-	# run petsc configure script
-	econf \
-		scrollOutput=1 \
-		CFLAGS="${CFLAGS}" \
-		CXXFLAGS="${CXXFLAGS}" \
-		LDFLAGS="${LDFLAGS}" \
-		--with-shared-libraries \
-		--with-single-library \
-		--with-clanguage=${mylang} \
-		$(use cxx && ! use complex-scalars && echo "with-c-support=1") \
-		--with-petsc-arch=${PETSC_ARCH} \
-		--with-precision=double \
-		--with-gnu-compilers \
-		--with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs lapack)" \
-		$(petsc_enable debug debugging) \
-		$(petsc_enable mpi) \
-		$(petsc_select mpi cc mpicc $(tc-getCC)) \
-		$(petsc_select mpi cxx mpicxx $(tc-getCXX)) \
-		$(petsc_enable fortran) \
-		$(use fortran && echo "$(petsc_select mpi fc mpif77 $(tc-getF77))") \
-		$(petsc_enable mpi mpi-compilers) \
-		$(petsc_select complex-scalars scalar-type complex real) \
-		--with-windows-graphics=0 \
-		--with-matlab=0 \
-		--with-cmake=cmake \
-		$(petsc_enable threads pthread) \
-		$(petsc_with afterimage afterimage \
-			/usr/include/libAfterImage -lAfterImage) \
-		$(petsc_with hdf5) \
-		$(petsc_with hypre hypre \
-			/usr/include/hypre -lHYPRE) \
-		$(petsc_with sparse suitesparse) \
-		$(petsc_with superlu superlu \
-			/usr/include/superlu -lsuperlu) \
-		$(petsc_with X x) \
-		$(petsc_with X x11) \
-		$(petsc_with scotch ptscotch \
-			/usr/include/scotch \
-		[-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \
-		$(petsc_with mumps scalapack \
-			/usr/include/scalapack -lscalapack) \
-		$(petsc_with mumps mumps \
-			/usr/include \
-			[-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \
-		--with-imagemagick=0 \
-		--with-python=0 \
-		$(petsc_with boost) \
-		$(petsc_with fftw)
-
-# not yet tested:
-#		python bindings, netcdf, fftw
-
-# failed dependencies, perhaps fixed in upstream soon:
-#		$(petsc_with metis parmetis) \ # needs metis too (>=5.0.2)
-#		$(petsc_with imagemagick imagemagick \
-#			/usr/include/ImageMagick $($(tc-getPKG_CONFIG) --libs MagickCore)) \
-#		$(petsc_enable threads pthreadclasses) \
-}
-
-src_install() {
-	# petsc install structure is very different from
-	# installing headers to /usr/include/petsc and lib to /usr/lib
-	# it also installs many unneeded executables and scripts
-	# so manual install is easier than cleanup after "emake install"
-	insinto /usr/include/${PN}
-	doins include/*.h*
-	insinto /usr/include/${PN}/${PETSC_ARCH}/include
-	doins ${PETSC_ARCH}/include/*
-	if use fortran; then
-		insinto /usr/include/${PN}/finclude
-		doins -r include/${PN}/finclude/*
-	fi
-	if ! use mpi ; then
-		insinto /usr/include/${PN}/mpiuni
-		doins include/mpiuni/*.h
-	fi
-	insinto /usr/include/${PN}/conf
-	doins lib/${PN}/conf/{variables,rules,test}
-	insinto /usr/include/${PN}/${PETSC_ARCH}/conf
-	doins ${PETSC_ARCH}/lib/${PN}/conf/{petscrules,petscvariables,RDict.db}
-	insinto /usr/include/${PN}/private
-	doins include/${PN}/private/*.h
-
-	# fix configuration files: replace "${S}" by installed location
-	sed -i \
-		-e "s:"${S}"::g" \
-		"${ED}"/usr/include/${PN}/${PETSC_ARCH}/include/petscconf.h \
-		"${ED}"/usr/include/${PN}/${PETSC_ARCH}/conf/petscvariables || die
-	sed -i \
-		-e "s:-I/include:-I${EPREFIX}/usr/include/${PN}:g" \
-		-e "s:-I/linux-gnu-cxx-opt/include:-I${EPREFIX}/usr/include/${PN}/${PETSC_ARCH}/include/:g" \
-		"${ED}"/usr/include/${PN}/${PETSC_ARCH}/conf/petscvariables || die
-	sed -i \
-		-e "s:usr/lib:usr/$(get_libdir):g" \
-		"${ED}"/usr/include/${PN}/${PETSC_ARCH}/include/petscconf.h || die
-
-	# add information about installation directory and
-	# PETSC_ARCH to environmental variables
-	cat >> 99petsc <<- EOF
-		PETSC_ARCH=${PETSC_ARCH}
-		PETSC_DIR=${EPREFIX}/usr/include/${PN}
-	EOF
-	doenvd 99petsc
-
-	dolib.so ${PETSC_ARCH}/lib/*.so
-	dolib.so ${PETSC_ARCH}/lib/*.so.*
-
-	if use doc ; then
-		einfo "installing documentation (this could take a while)"
-		dodoc docs/manual.pdf
-		dohtml -r docs/*.html docs/changes docs/manualpages
-	fi
-}

diff --git a/sci-mathematics/petsc/petsc-3.6.3.ebuild b/sci-mathematics/petsc/petsc-3.6.3.ebuild
deleted file mode 100644
index 87537cb..0000000
--- a/sci-mathematics/petsc/petsc-3.6.3.ebuild
+++ /dev/null
@@ -1,247 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit eutils flag-o-matic fortran-2 python-any-r1 toolchain-funcs versionator
-
-MY_P="${PN}-$(replace_version_separator _ -)"
-
-DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation"
-HOMEPAGE="http://www.mcs.anl.gov/petsc/"
-SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${MY_P}.tar.gz"
-
-LICENSE="petsc"
-SLOT="0"
-KEYWORDS="~x86 ~amd64"
-IUSE="afterimage boost complex-scalars cxx debug doc fftw
-	fortran hdf5 hypre mpi mumps scotch sparse superlu threads X"
-# Failed: imagemagick metis
-
-# hypre and superlu curretly exclude each other due to missing linking to hypre
-# if both are enabled
-REQUIRED_USE="
-	afterimage? ( X )
-	hdf5? ( mpi )
-	hypre? ( cxx mpi )
-	mumps? ( mpi scotch )
-	scotch? ( mpi )
-	^^ ( hypre superlu )
-"
-#	imagemagick? ( X )
-
-RDEPEND="
-	virtual/blas
-	virtual/lapack
-	afterimage? ( media-libs/libafterimage )
-	boost? ( dev-libs/boost )
-	fftw? ( sci-libs/fftw:3.0[mpi?] )
-	hdf5? ( sci-libs/hdf5[mpi?] )
-	hypre? ( >=sci-libs/hypre-2.8.0b[mpi?] )
-	mpi? ( virtual/mpi[cxx?,fortran?] )
-	mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack )
-	scotch? ( sci-libs/scotch[mpi?] )
-	sparse? ( sci-libs/suitesparse >=sci-libs/cholmod-1.7.0 )
-	superlu? ( sci-libs/superlu )
-	X? ( x11-libs/libX11 )
-"
-#	metis? ( sci-libs/parmetis )
-#	imagemagick? ( media-gfx/imagemagick )
-
-DEPEND="${RDEPEND}
-	${PYTHON_DEPS}
-	virtual/pkgconfig
-	dev-util/cmake
-"
-# cmake is used for parallel building
-# in some configuration setups, legacy build is used (slow)
-
-#
-# PETSc does not want its Makefiles to be invoked with anything higher than
-# -j1. The underlying build system does automatically invoke a parallel
-# build. This might not be what you want, but *hey* not your choice.
-#
-MAKEOPTS="${MAKEOPTS} -j1"
-
-S="${WORKDIR}/${MY_P}"
-
-src_prepare() {
-	epatch \
-		"${FILESDIR}"/${PN}-3.6.0-disable-rpath.patch \
-		"${FILESDIR}"/${PN}-3.6.0-fix_sandbox_violation.patch
-
-	sed -i -e 's%/usr/bin/env python%/usr/bin/env python2%' configure || die
-}
-
-src_configure() {
-	# bug 548498
-	# PETSc runs mpi processes during configure that result in a sandbox
-	# violation by trying to open /proc/mtrr rw. This is not easy to
-	# mitigate because it happens in libpciaccess.so called by libhwloc.so,
-	# which is used by libmpi.so.
-	addpredict /proc/mtrr
-
-	# petsc uses --with-blah=1 and --with-blah=0 to en/disable options
-	petsc_enable() {
-		use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0"
-	}
-	# add external library:
-	# petsc_with use_flag libname libdir
-	# petsc_with use_flag libname include linking_libs
-	petsc_with() {
-		local myuse p=${2:-${1}}
-		if use ${1}; then
-			myuse="--with-${p}=1"
-			if [[ $# -ge 4 ]]; then
-				myuse="${myuse} --with-${p}-include=${EPREFIX}${3}"
-				shift 3
-				myuse="${myuse} --with-${p}-lib=$@"
-			else
-				myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}"
-			fi
-		else
-			myuse="--with-${p}=0"
-		fi
-		echo ${myuse}
-	}
-
-	# select between configure options depending on use flag
-	petsc_select() {
-		use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4"
-	}
-
-	local mylang
-	local myopt
-
-	use cxx && mylang="cxx" || mylang="c"
-	use debug && myopt="debug" || myopt="opt"
-
-	# environmental variables expected by petsc during build
-	export PETSC_DIR="${S}"
-	export PETSC_ARCH="linux-gnu-${mylang}-${myopt}"
-
-	if use debug; then
-		strip-flags
-		filter-flags -O*
-	fi
-
-	# C Support on Cxx builds is enabled if possible
-	# i.e. when not using complex scalars
-	# (no complex type for both available at the same time)
-
-	# run petsc configure script
-	econf \
-		scrollOutput=1 \
-		CFLAGS="${CFLAGS}" \
-		CXXFLAGS="${CXXFLAGS}" \
-		LDFLAGS="${LDFLAGS}" \
-		--with-shared-libraries \
-		--with-single-library \
-		--with-clanguage=${mylang} \
-		$(use cxx && ! use complex-scalars && echo "with-c-support=1") \
-		--with-petsc-arch=${PETSC_ARCH} \
-		--with-precision=double \
-		--with-gnu-compilers \
-		--with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs lapack)" \
-		$(petsc_enable debug debugging) \
-		$(petsc_enable mpi) \
-		$(petsc_select mpi cc mpicc $(tc-getCC)) \
-		$(petsc_select mpi cxx mpicxx $(tc-getCXX)) \
-		$(petsc_enable fortran) \
-		$(use fortran && echo "$(petsc_select mpi fc mpif77 $(tc-getF77))") \
-		$(petsc_enable mpi mpi-compilers) \
-		$(petsc_select complex-scalars scalar-type complex real) \
-		--with-windows-graphics=0 \
-		--with-matlab=0 \
-		--with-cmake=cmake \
-		$(petsc_enable threads pthread) \
-		$(petsc_with afterimage afterimage \
-			/usr/include/libAfterImage -lAfterImage) \
-		$(petsc_with hdf5) \
-		$(petsc_with hypre hypre \
-			/usr/include/hypre -lHYPRE) \
-		$(petsc_with sparse suitesparse) \
-		$(petsc_with superlu superlu \
-			/usr/include/superlu -lsuperlu) \
-		$(petsc_with X x) \
-		$(petsc_with X x11) \
-		$(petsc_with scotch ptscotch \
-			/usr/include/scotch \
-		[-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \
-		$(petsc_with mumps scalapack \
-			/usr/include/scalapack -lscalapack) \
-		$(petsc_with mumps mumps \
-			/usr/include \
-			[-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \
-		--with-imagemagick=0 \
-		--with-python=0 \
-		$(petsc_with boost) \
-		$(petsc_with fftw)
-
-# not yet tested:
-#		python bindings, netcdf, fftw
-
-# failed dependencies, perhaps fixed in upstream soon:
-#		$(petsc_with metis parmetis) \ # needs metis too (>=5.0.2)
-#		$(petsc_with imagemagick imagemagick \
-#			/usr/include/ImageMagick $($(tc-getPKG_CONFIG) --libs MagickCore)) \
-#		$(petsc_enable threads pthreadclasses) \
-}
-
-src_install() {
-	# petsc install structure is very different from
-	# installing headers to /usr/include/petsc and lib to /usr/lib
-	# it also installs many unneeded executables and scripts
-	# so manual install is easier than cleanup after "emake install"
-	insinto /usr/include/${PN}
-	doins include/*.h*
-	insinto /usr/include/${PN}/${PETSC_ARCH}/include
-	doins ${PETSC_ARCH}/include/*
-	if use fortran; then
-		insinto /usr/include/${PN}/finclude
-		doins -r include/${PN}/finclude/*
-	fi
-	if ! use mpi ; then
-		insinto /usr/include/${PN}/mpiuni
-		doins include/mpiuni/*.h
-	fi
-	insinto /usr/include/${PN}/conf
-	doins lib/${PN}/conf/{variables,rules,test}
-	insinto /usr/include/${PN}/${PETSC_ARCH}/conf
-	doins ${PETSC_ARCH}/lib/${PN}/conf/{petscrules,petscvariables,RDict.db}
-	insinto /usr/include/${PN}/private
-	doins include/${PN}/private/*.h
-
-	# fix configuration files: replace "${S}" by installed location
-	sed -i \
-		-e "s:"${S}"::g" \
-		"${ED}"/usr/include/${PN}/${PETSC_ARCH}/include/petscconf.h \
-		"${ED}"/usr/include/${PN}/${PETSC_ARCH}/conf/petscvariables || die
-	sed -i \
-		-e "s:-I/include:-I${EPREFIX}/usr/include/${PN}:g" \
-		-e "s:-I/linux-gnu-cxx-opt/include:-I${EPREFIX}/usr/include/${PN}/${PETSC_ARCH}/include/:g" \
-		"${ED}"/usr/include/${PN}/${PETSC_ARCH}/conf/petscvariables || die
-	sed -i \
-		-e "s:usr/lib:usr/$(get_libdir):g" \
-		"${ED}"/usr/include/${PN}/${PETSC_ARCH}/include/petscconf.h || die
-
-	# add information about installation directory and
-	# PETSC_ARCH to environmental variables
-	cat >> 99petsc <<- EOF
-		PETSC_ARCH=${PETSC_ARCH}
-		PETSC_DIR=${EPREFIX}/usr/include/${PN}
-	EOF
-	doenvd 99petsc
-
-	dolib.so ${PETSC_ARCH}/lib/*.so
-	dolib.so ${PETSC_ARCH}/lib/*.so.*
-
-	if use doc ; then
-		einfo "installing documentation (this could take a while)"
-		dodoc docs/manual.pdf
-		dohtml -r docs/*.html docs/changes docs/manualpages
-	fi
-}

diff --git a/sci-mathematics/petsc/petsc-3.7.0.ebuild b/sci-mathematics/petsc/petsc-3.7.0.ebuild
deleted file mode 100644
index bcf8cc5..0000000
--- a/sci-mathematics/petsc/petsc-3.7.0.ebuild
+++ /dev/null
@@ -1,255 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit eutils flag-o-matic fortran-2 python-any-r1 toolchain-funcs versionator
-
-MY_P="${PN}-$(replace_version_separator _ -)"
-
-DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation"
-HOMEPAGE="http://www.mcs.anl.gov/petsc/"
-SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${MY_P}.tar.gz"
-
-LICENSE="petsc"
-SLOT="0"
-KEYWORDS="~x86 ~amd64"
-IUSE="afterimage boost complex-scalars cxx debug doc fftw
-	fortran hdf5 hypre mpi mumps scotch sparse superlu threads X"
-# Failed: imagemagick metis
-
-# hypre and superlu curretly exclude each other due to missing linking to hypre
-# if both are enabled
-REQUIRED_USE="
-	afterimage? ( X )
-	hdf5? ( mpi )
-	hypre? ( cxx mpi )
-	mumps? ( mpi scotch )
-	scotch? ( mpi )
-	^^ ( hypre superlu )
-"
-#	imagemagick? ( X )
-
-RDEPEND="
-	virtual/blas
-	virtual/lapack
-	afterimage? ( media-libs/libafterimage )
-	boost? ( dev-libs/boost )
-	fftw? ( sci-libs/fftw:3.0[mpi?] )
-	hdf5? ( sci-libs/hdf5[mpi?] )
-	hypre? ( >=sci-libs/hypre-2.8.0b[mpi?] )
-	mpi? ( virtual/mpi[cxx?,fortran?] )
-	mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack )
-	scotch? ( sci-libs/scotch[mpi?] )
-	sparse? ( sci-libs/suitesparse >=sci-libs/cholmod-1.7.0 )
-	superlu? ( sci-libs/superlu )
-	X? ( x11-libs/libX11 )
-"
-#	metis? ( sci-libs/parmetis )
-#	imagemagick? ( media-gfx/imagemagick )
-
-DEPEND="${RDEPEND}
-	${PYTHON_DEPS}
-	virtual/pkgconfig
-	dev-util/cmake
-"
-# cmake is used for parallel building
-# in some configuration setups, legacy build is used (slow)
-
-#
-# PETSc does not want its Makefiles to be invoked with anything higher than
-# -j1. The underlying build system does automatically invoke a parallel
-# build. This might not be what you want, but *hey* not your choice.
-#
-# V=1 enables verbose output with full compiler and linker invocation
-#
-MAKEOPTS="${MAKEOPTS} -j1 V=1"
-
-S="${WORKDIR}/${MY_P}"
-
-src_prepare() {
-	epatch \
-		"${FILESDIR}"/${P}-disable-rpath.patch \
-		"${FILESDIR}"/${P}-fix_sandbox_violation.patch
-
-	sed -i -e 's%/usr/bin/env python%/usr/bin/env python2%' configure || die
-}
-
-src_configure() {
-	# bug 548498
-	# PETSc runs mpi processes during configure that result in a sandbox
-	# violation by trying to open /proc/mtrr rw. This is not easy to
-	# mitigate because it happens in libpciaccess.so called by libhwloc.so,
-	# which is used by libmpi.so.
-	addpredict /proc/mtrr
-
-	# petsc uses --with-blah=1 and --with-blah=0 to en/disable options
-	petsc_enable() {
-		use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0"
-	}
-	# add external library:
-	# petsc_with use_flag libname libdir
-	# petsc_with use_flag libname include linking_libs
-	petsc_with() {
-		local myuse p=${2:-${1}}
-		if use ${1}; then
-			myuse="--with-${p}=1"
-			if [[ $# -ge 4 ]]; then
-				myuse="${myuse} --with-${p}-include=${EPREFIX}${3}"
-				shift 3
-				myuse="${myuse} --with-${p}-lib=$@"
-			else
-				myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}"
-			fi
-		else
-			myuse="--with-${p}=0"
-		fi
-		echo ${myuse}
-	}
-
-	# select between configure options depending on use flag
-	petsc_select() {
-		use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4"
-	}
-
-	local mylang
-	local myopt
-
-	use cxx && mylang="cxx" || mylang="c"
-	use debug && myopt="debug" || myopt="opt"
-
-	# environmental variables expected by petsc during build
-	export PETSC_DIR="${S}"
-	export PETSC_ARCH="linux-gnu-${mylang}-${myopt}"
-
-	if use debug; then
-		strip-flags
-		filter-flags -O*
-	fi
-
-	# C Support on Cxx builds is enabled if possible
-	# i.e. when not using complex scalars
-	# (no complex type for both available at the same time)
-
-	# run petsc configure script
-	econf \
-		scrollOutput=1 \
-		FFLAGS="${FFLAGS} -fPIC" \
-		CFLAGS="${CFLAGS} -fPIC" \
-		CXXFLAGS="${CXXFLAGS} -fPIC" \
-		LDFLAGS="${LDFLAGS}" \
-		--with-shared-libraries \
-		--with-single-library \
-		--with-clanguage=${mylang} \
-		$(use cxx && ! use complex-scalars && echo "with-c-support=1") \
-		--with-petsc-arch=${PETSC_ARCH} \
-		--with-precision=double \
-		--with-gnu-compilers \
-		--with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs lapack)" \
-		$(petsc_enable debug debugging) \
-		$(petsc_enable mpi) \
-		$(petsc_select mpi cc mpicc $(tc-getCC)) \
-		$(petsc_select mpi cxx mpicxx $(tc-getCXX)) \
-		$(petsc_enable fortran) \
-		$(use fortran && echo "$(petsc_select mpi fc mpif77 $(tc-getF77))") \
-		$(petsc_enable mpi mpi-compilers) \
-		$(petsc_select complex-scalars scalar-type complex real) \
-		--with-windows-graphics=0 \
-		--with-matlab=0 \
-		--with-cmake=cmake \
-		$(petsc_enable threads pthread) \
-		$(petsc_with afterimage afterimage \
-			/usr/include/libAfterImage -lAfterImage) \
-		$(petsc_with hdf5) \
-		$(petsc_with hypre hypre \
-			/usr/include/hypre -lHYPRE) \
-		$(petsc_with sparse suitesparse) \
-		$(petsc_with superlu superlu \
-			/usr/include/superlu -lsuperlu) \
-		$(petsc_with X x) \
-		$(petsc_with X x11) \
-		$(petsc_with scotch ptscotch \
-			/usr/include/scotch \
-		[-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \
-		$(petsc_with mumps scalapack \
-			/usr/include/scalapack -lscalapack) \
-		$(petsc_with mumps mumps \
-			/usr/include \
-			[-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \
-		--with-imagemagick=0 \
-		--with-python=0 \
-		$(petsc_with boost) \
-		$(petsc_with fftw)
-
-# not yet tested:
-#		python bindings, netcdf, fftw
-
-# failed dependencies, perhaps fixed in upstream soon:
-#		$(petsc_with metis parmetis) \ # needs metis too (>=5.0.2)
-#		$(petsc_with imagemagick imagemagick \
-#			/usr/include/ImageMagick $($(tc-getPKG_CONFIG) --libs MagickCore)) \
-#		$(petsc_enable threads pthreadclasses) \
-}
-
-src_install() {
-	# petsc install structure is very different from
-	# installing headers to /usr/include/petsc and lib to /usr/lib
-	# it also installs many unneeded executables and scripts
-	# so manual install is easier than cleanup after "emake install"
-	insinto /usr/include/${PN}
-	doins include/*.h*
-	insinto /usr/include/${PN}/${PETSC_ARCH}/include
-	doins ${PETSC_ARCH}/include/*
-	if use fortran; then
-		insinto /usr/include/${PN}/finclude
-		doins -r include/${PN}/finclude/*
-	fi
-	if ! use mpi ; then
-		insinto /usr/include/${PN}/mpiuni
-		doins include/mpiuni/*.h
-	fi
-	insinto /usr/include/${PN}/conf
-	doins lib/${PN}/conf/{variables,rules,test}
-	insinto /usr/include/${PN}/${PETSC_ARCH}/conf
-	doins ${PETSC_ARCH}/lib/${PN}/conf/{petscrules,petscvariables,RDict.db}
-	insinto /usr/include/${PN}/private
-	doins include/${PN}/private/*.h
-
-	# fix configuration files: replace "${S}" by installed location
-	sed -i \
-		-e "s:"${S}"::g" \
-		"${ED}"/usr/include/${PN}/${PETSC_ARCH}/include/petscconf.h \
-		"${ED}"/usr/include/${PN}/${PETSC_ARCH}/conf/petscvariables || die
-	sed -i \
-		-e "s:-I/include:-I${EPREFIX}/usr/include/${PN}:g" \
-		-e "s:-I/linux-gnu-cxx-opt/include:-I${EPREFIX}/usr/include/${PN}/${PETSC_ARCH}/include/:g" \
-		"${ED}"/usr/include/${PN}/${PETSC_ARCH}/conf/petscvariables || die
-	sed -i \
-		-e "s:usr/lib:usr/$(get_libdir):g" \
-		"${ED}"/usr/include/${PN}/${PETSC_ARCH}/include/petscconf.h || die
-
-	# fix the include path of petscvariables in lib/${PN}/conf/variables
-	# bug #559172
-	sed -i -e 's#lib/petsc/conf/#conf/#g' \
-		"${ED}"/usr/include/${PN}/conf/variables || die
-
-	# add information about installation directory and
-	# PETSC_ARCH to environmental variables
-	cat >> 99petsc <<- EOF
-		PETSC_ARCH=${PETSC_ARCH}
-		PETSC_DIR=${EPREFIX}/usr/include/${PN}
-	EOF
-	doenvd 99petsc
-
-	dolib.so ${PETSC_ARCH}/lib/*.so
-	dolib.so ${PETSC_ARCH}/lib/*.so.*
-
-	if use doc ; then
-		einfo "installing documentation (this could take a while)"
-		dodoc docs/manual.pdf
-		dohtml -r docs/*.html docs/changes docs/manualpages
-	fi
-}