1 |
commit: 820ffc621b5edafd445a0cd434de82f1f904663b |
2 |
Author: Justin Lecher <jlec <AT> gentoo <DOT> org> |
3 |
AuthorDate: Fri Oct 30 12:25:11 2015 +0000 |
4 |
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> |
5 |
CommitDate: Fri Oct 30 12:25:11 2015 +0000 |
6 |
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=820ffc62 |
7 |
|
8 |
dev-lang/R: Clean old |
9 |
|
10 |
Package-Manager: portage-2.2.23 |
11 |
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org> |
12 |
|
13 |
dev-lang/R/Manifest | 6 - |
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dev-lang/R/R-3.0.1.ebuild | 206 -------------------- |
15 |
dev-lang/R/R-3.0.3.ebuild | 203 -------------------- |
16 |
dev-lang/R/R-3.1.0.ebuild | 206 -------------------- |
17 |
dev-lang/R/R-3.1.1.ebuild | 206 -------------------- |
18 |
dev-lang/R/R-3.1.2.ebuild | 206 -------------------- |
19 |
dev-lang/R/R-3.2.0-r1.ebuild | 207 --------------------- |
20 |
dev-lang/R/R-3.2.2.ebuild | 2 +- |
21 |
dev-lang/R/files/R-2.12.1-ldflags.patch | 15 -- |
22 |
dev-lang/R/files/R-2.14.1-rmath-shared.patch | 24 --- |
23 |
...-omitted-extern-R_running_as_main_program.patch | 12 -- |
24 |
11 files changed, 1 insertion(+), 1292 deletions(-) |
25 |
|
26 |
diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest |
27 |
index be5008e..a60e55e 100644 |
28 |
--- a/dev-lang/R/Manifest |
29 |
+++ b/dev-lang/R/Manifest |
30 |
@@ -1,8 +1,2 @@ |
31 |
DIST R-20130129.bash_completion.bz2 4209 SHA256 487e969b94563fec98ec58de7e6142e9361d4219088add0fca282b482a9e01b1 SHA512 910b26e16cfebe677f438abfa5f2652e582db143d91dbf0e7d4b1ea33462c7e5c89c3a3619c63ae98bba26b11a5adb16eda9d344f8cdbe4f0feabc546993c1a5 WHIRLPOOL 2368efaed37fcb6e010f6a234864631f68549bd8e3f733561170cc5b28f5557e546d8561246fb265a481a47991a262fec3acf6abc1dc3929a9357405e0d3c6fc |
32 |
-DIST R-3.0.1.tar.gz 25508280 SHA256 af90488af3141103b211dc81b6f17d1f0faf4f17684c579a32dfeb25d0d87134 SHA512 470edbf4a4fccf9310add110d7fa7f338e410e412b3ec84f6ea5f1253e94a435e185a7a1b62b22aee443293147ff7bcca139015b490a9271a502b1bfbf1426a2 WHIRLPOOL f45c960280f51cba3a4f3730fa79671808b3c07fd49f97b2cdce4a1de45986e62ac9bb24c6f764386a3ef1034a266b86f041a1a1652ec7f687a4db08a074d22e |
33 |
-DIST R-3.0.3.tar.gz 28075821 SHA256 b97cfd9540f294ab786e846153f3dd8605610d7e27616bfb4296795bc4fde6d6 SHA512 881c9c0a8d866eb87218a5cdca72153c9ef0fa0a0f091595fc065bdcbc1ea8b0bd1a2fb3008457b12e1b5025a7e70bd7764de4286a57ad3f73226367b2fc4e83 WHIRLPOOL 076d041c0581dc211a4ee53cf5cad731dc0ece33bbb34f8c066dc660ef0c1f7dcfc1b3359c6a0cebfa2ccec9b689776965a530edcf9f81758c4e003242347225 |
34 |
-DIST R-3.1.0.tar.gz 28469975 SHA256 8a680390f84c58c01dcdefd682eaa0e90389f09e6d2f2e090c71af40065f5fe2 SHA512 bb21fc90c7d37a5328031ed784e7dcbd20259d1837c33db3b51c14a116939a53496683d5de142a1223e89fc12406294efc67bed3595131615e9607d5ffab5ce2 WHIRLPOOL b376180d700d18780eb344b737a3a1bfc8b40f67967032e0f34abf940d76c3ffd7694be9f2f10be985571e8f94d92a6970a3d1cba503280e3fcf6df7a5e4298e |
35 |
-DIST R-3.1.1.tar.gz 28606569 SHA256 ce5c4d5e34414ce8f1ec2d5642861435fa1ddc4cd89bd336172bbe25a62c7a19 SHA512 a75d8b82645bd9486873669b802924448d591013076e3d7dc958502dc6f0dac7d7fb78f3921d34a1eac1383f141b6e800f4293f7fac09651e0176cf84c431af9 WHIRLPOOL ec05c70193a229cbaf15f3432853070c6666c3963a4e2719a6d8ff188bfc2cada0d1f2fe90a9dd6b43f46913138afed0be387ba73b7f9c4d87abc362cc8a5393 |
36 |
-DIST R-3.1.2.tar.gz 28655941 SHA256 bcd150afcae0e02f6efb5f35a6ab72432be82e849ec52ce0bb89d8c342a8fa7a SHA512 fee20cd94d14bd46cc36fb265ed4d64f44eaa3929dd13c62d29a5883fde607aba63e28a4b0f265ede63f78788996deaee36acf6a70cc0bc90a705c9782be01a1 WHIRLPOOL f02d543c0fd7e89e63aba844b7c0f651a9a6bb5dbfcd58bdb64b49d08335c3270383eb62291b9f2f20ef6ec9f39eef5cf77ae1af3109296f8b1898227cca99d1 |
37 |
-DIST R-3.2.0.tar.gz 29124927 SHA256 f5ae953f18ba6f3d55b46556bbbf73441350f9fd22625402b723a2b81ff64f35 SHA512 c6041c854251d51dd936d3a3632c2958a0437c58488f93e5ba810e957fb7f2276e3fe4f615fb4705f2fc5a66aa50a828b54b5e4e7b4358c7fd465c71531b9828 WHIRLPOOL e21a65b9197a202691dbe903b441caf7d8b92efdffb86dcccdbf09d080177cfd472a54d381df1cca749937434ffb9c08ac74198457e320353207cd00837e1086 |
38 |
DIST R-3.2.2.tar.gz 29772864 SHA256 9c9152e74134b68b0f3a1c7083764adc1cb56fd8336bec003fd0ca550cd2461d SHA512 71ba470875262b9f00fb6970f209788df4dad30e0a28373b824b60d8bc6401afb7786e65387663c6490c7ddcd2bfd7f808a270a3e63238f3d7565d5f93607138 WHIRLPOOL fea59929ada1d67dafc6ad89409d18ad173af7990384033f490a00e0f794d9919aecf7cd37089d105fe03b9cf64d079e5d148622571cec3eb924c1c5bd00081e |
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|
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diff --git a/dev-lang/R/R-3.0.1.ebuild b/dev-lang/R/R-3.0.1.ebuild |
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deleted file mode 100644 |
42 |
index 26fd33c..0000000 |
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--- a/dev-lang/R/R-3.0.1.ebuild |
44 |
+++ /dev/null |
45 |
@@ -1,206 +0,0 @@ |
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-# Copyright 1999-2015 Gentoo Foundation |
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-# Distributed under the terms of the GNU General Public License v2 |
48 |
-# $Id$ |
49 |
- |
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-EAPI=5 |
51 |
- |
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-inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib versionator toolchain-funcs |
53 |
- |
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-BCP=${PN}-20130129.bash_completion |
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-DESCRIPTION="Language and environment for statistical computing and graphics" |
56 |
-HOMEPAGE="http://www.r-project.org/" |
57 |
-SRC_URI=" |
58 |
- mirror://cran/src/base/R-3/${P}.tar.gz |
59 |
- bash-completion? ( https://dev.gentoo.org/~bicatali/distfiles/${BCP}.bz2 )" |
60 |
- |
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-LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1" |
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-SLOT="0" |
63 |
-KEYWORDS="amd64 hppa ia64 ppc ppc64 sparc x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos" |
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-IUSE="bash-completion cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X" |
65 |
-REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )" |
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- |
67 |
-CDEPEND=" |
68 |
- app-arch/bzip2 |
69 |
- app-text/ghostscript-gpl |
70 |
- dev-libs/libpcre |
71 |
- virtual/blas |
72 |
- cairo? ( x11-libs/cairo[X] x11-libs/pango ) |
73 |
- icu? ( dev-libs/icu:= ) |
74 |
- jpeg? ( virtual/jpeg:0 ) |
75 |
- lapack? ( virtual/lapack ) |
76 |
- perl? ( dev-lang/perl ) |
77 |
- png? ( media-libs/libpng:0= ) |
78 |
- readline? ( sys-libs/readline:0= ) |
79 |
- tk? ( dev-lang/tk:0= ) |
80 |
- X? ( x11-libs/libXmu x11-misc/xdg-utils )" |
81 |
- |
82 |
-DEPEND="${CDEPEND} |
83 |
- virtual/pkgconfig |
84 |
- doc? ( |
85 |
- virtual/latex-base |
86 |
- dev-texlive/texlive-fontsrecommended |
87 |
- )" |
88 |
- |
89 |
-RDEPEND="${CDEPEND} |
90 |
- ( || ( <sys-libs/zlib-1.2.5.1-r1 >=sys-libs/zlib-1.2.5.1-r2[minizip] ) ) |
91 |
- app-arch/xz-utils |
92 |
- java? ( >=virtual/jre-1.5 )" |
93 |
- |
94 |
-RESTRICT="minimal? ( test )" |
95 |
- |
96 |
-R_DIR="${EROOT%/}/usr/$(get_libdir)/${PN}" |
97 |
- |
98 |
-pkg_setup() { |
99 |
- if use openmp; then |
100 |
- FORTRAN_NEED_OPENMP=1 |
101 |
- tc-has-openmp || die "Please enable openmp support in your compiler" |
102 |
- fi |
103 |
- fortran-2_pkg_setup |
104 |
- filter-ldflags -Wl,-Bdirect -Bdirect |
105 |
- # avoid using existing R installation |
106 |
- unset R_HOME |
107 |
- # Temporary fix for bug #419761 |
108 |
- if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then |
109 |
- append-flags -fno-ipa-cp-clone |
110 |
- fi |
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-} |
112 |
- |
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-src_prepare() { |
114 |
- # gentoo bug #322965 (not applied upstream) |
115 |
- # https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=14505 |
116 |
- epatch "${FILESDIR}"/${PN}-2.11.1-parallel.patch |
117 |
- |
118 |
- # respect ldflags (not applied upstream) |
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- # https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=14506 |
120 |
- epatch "${FILESDIR}"/${PN}-2.12.1-ldflags.patch |
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- |
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- # gentoo bug #383431 |
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- # https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=14951 |
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- epatch "${FILESDIR}"/${PN}-2.13.1-zlib_header_fix.patch |
125 |
- |
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- # https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=14953 |
127 |
- epatch "${FILESDIR}"/${PN}-3.0.0-rmath-shared.patch |
128 |
- |
129 |
- # fix packages.html for doc (gentoo bug #205103) |
130 |
- sed -i \ |
131 |
- -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \ |
132 |
- src/library/tools/R/Rd.R || die |
133 |
- |
134 |
- # fix Rscript path when installed (gentoo bug #221061) |
135 |
- sed -i \ |
136 |
- -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${R_DIR}\"':" \ |
137 |
- src/unix/Makefile.in || die "sed unix Makefile failed" |
138 |
- |
139 |
- # fix HTML links to manual (gentoo bug #273957) |
140 |
- sed -i \ |
141 |
- -e 's:\.\./manual/:manual/:g' \ |
142 |
- $(grep -Flr ../manual/ doc) || die "sed for HTML links failed" |
143 |
- |
144 |
- use lapack && \ |
145 |
- export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)" |
146 |
- |
147 |
- if use X; then |
148 |
- export R_BROWSER="$(type -p xdg-open)" |
149 |
- export R_PDFVIEWER="$(type -p xdg-open)" |
150 |
- fi |
151 |
- use perl && \ |
152 |
- export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}" |
153 |
- |
154 |
- # don't search /usr/local |
155 |
- sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die |
156 |
- # Fix for Darwin (OS X) |
157 |
- if use prefix; then |
158 |
- if [[ ${CHOST} == *-darwin* ]] ; then |
159 |
- sed -i \ |
160 |
- -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \ |
161 |
- -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \ |
162 |
- -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \ |
163 |
- -e "/SHLIB_EXT/s/\.so/.dylib/" \ |
164 |
- configure.ac || die |
165 |
- # sort of "undo" 2.14.1-rmath-shared.patch |
166 |
- sed -i \ |
167 |
- -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT%/}/usr/$(get_libdir)/libRmath.dylib:" \ |
168 |
- src/nmath/standalone/Makefile.in || die |
169 |
- else |
170 |
- append-ldflags -Wl,-rpath="${EROOT%/}/usr/$(get_libdir)/R/lib" |
171 |
- fi |
172 |
- fi |
173 |
- AT_M4DIR=m4 eaclocal |
174 |
- eautoconf |
175 |
-} |
176 |
- |
177 |
-src_configure() { |
178 |
- econf \ |
179 |
- --enable-byte-compiled-packages \ |
180 |
- --enable-R-shlib \ |
181 |
- --disable-R-framework \ |
182 |
- --with-system-zlib \ |
183 |
- --with-system-bzlib \ |
184 |
- --with-system-pcre \ |
185 |
- --with-system-xz \ |
186 |
- --without-blas \ |
187 |
- --docdir="${EPREFIX}/usr/share/doc/${PF}" \ |
188 |
- rdocdir="${EPREFIX}/usr/share/doc/${PF}" \ |
189 |
- $(use_enable nls) \ |
190 |
- $(use_enable openmp) \ |
191 |
- $(use_enable profile R-profiling) \ |
192 |
- $(use_enable profile memory-profiling) \ |
193 |
- $(use_enable static-libs static) \ |
194 |
- $(use_enable static-libs R-static-lib) \ |
195 |
- $(use_with cairo) \ |
196 |
- $(use_with icu ICU) \ |
197 |
- $(use_with jpeg jpeglib) \ |
198 |
- $(use_with lapack) \ |
199 |
- $(use_with !minimal recommended-packages) \ |
200 |
- $(use_with png libpng) \ |
201 |
- $(use_with readline) \ |
202 |
- $(use_with tiff libtiff) \ |
203 |
- $(use_with tk tcltk) \ |
204 |
- $(use_with X x) |
205 |
-} |
206 |
- |
207 |
-src_compile() { |
208 |
- export VARTEXFONTS="${T}/fonts" |
209 |
- emake AR="$(tc-getAR)" |
210 |
- emake -C src/nmath/standalone shared $(use static-libs && echo static) AR="$(tc-getAR)" |
211 |
- use doc && emake info pdf |
212 |
-} |
213 |
- |
214 |
-src_install() { |
215 |
- default |
216 |
- emake -j1 -C src/nmath/standalone DESTDIR="${D}" install |
217 |
- |
218 |
- if use doc; then |
219 |
- emake DESTDIR="${D}" install-info install-pdf |
220 |
- dosym ../manual /usr/share/doc/${PF}/html/manual |
221 |
- fi |
222 |
- |
223 |
- cat > 99R <<-EOF |
224 |
- LDPATH=${R_DIR}/lib |
225 |
- R_HOME=${R_DIR} |
226 |
- EOF |
227 |
- doenvd 99R |
228 |
- use bash-completion && newbashcomp "${WORKDIR}"/${BCP} ${PN} |
229 |
- # The buildsystem has a different understanding of install_names than what |
230 |
- # we require. Since it builds modules like shared objects (wrong), many |
231 |
- # objects (all modules) get an incorrect install_name. Fixing the build |
232 |
- # system here is not really trivial. |
233 |
- if [[ ${CHOST} == *-darwin* ]] ; then |
234 |
- local mod |
235 |
- pushd "${ED}"/usr/lib/R > /dev/null |
236 |
- for mod in $(find . -name "*.dylib") ; do |
237 |
- mod=${mod#./} |
238 |
- install_name_tool -id "${EPREFIX}/usr/lib/R/${mod}" \ |
239 |
- "${mod}" |
240 |
- done |
241 |
- popd > /dev/null |
242 |
- fi |
243 |
- docompress -x /usr/share/doc/${PF}/NEWS.rds |
244 |
-} |
245 |
- |
246 |
-pkg_postinst() { |
247 |
- if use java; then |
248 |
- einfo "Re-initializing java paths for ${P}" |
249 |
- R CMD javareconf |
250 |
- fi |
251 |
-} |
252 |
|
253 |
diff --git a/dev-lang/R/R-3.0.3.ebuild b/dev-lang/R/R-3.0.3.ebuild |
254 |
deleted file mode 100644 |
255 |
index ec69959..0000000 |
256 |
--- a/dev-lang/R/R-3.0.3.ebuild |
257 |
+++ /dev/null |
258 |
@@ -1,203 +0,0 @@ |
259 |
-# Copyright 1999-2014 Gentoo Foundation |
260 |
-# Distributed under the terms of the GNU General Public License v2 |
261 |
-# $Id$ |
262 |
- |
263 |
-EAPI=5 |
264 |
- |
265 |
-inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib versionator toolchain-funcs |
266 |
- |
267 |
-BCP=${PN}-20130129.bash_completion |
268 |
-DESCRIPTION="Language and environment for statistical computing and graphics" |
269 |
-HOMEPAGE="http://www.r-project.org/" |
270 |
-SRC_URI=" |
271 |
- mirror://cran/src/base/R-3/${P}.tar.gz |
272 |
- bash-completion? ( https://dev.gentoo.org/~bicatali/distfiles/${BCP}.bz2 )" |
273 |
- |
274 |
-LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1" |
275 |
-SLOT="0" |
276 |
-KEYWORDS="~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos" |
277 |
-IUSE="bash-completion cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X" |
278 |
-REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )" |
279 |
- |
280 |
-CDEPEND=" |
281 |
- app-arch/bzip2:0= |
282 |
- app-arch/xz-utils:0= |
283 |
- app-text/ghostscript-gpl |
284 |
- dev-libs/libpcre:3= |
285 |
- virtual/blas:0 |
286 |
- || ( >=sys-apps/coreutils-8.15 sys-freebsd/freebsd-bin app-misc/realpath ) |
287 |
- cairo? ( x11-libs/cairo[X] x11-libs/pango ) |
288 |
- icu? ( dev-libs/icu:= ) |
289 |
- jpeg? ( virtual/jpeg:0 ) |
290 |
- lapack? ( virtual/lapack:0 ) |
291 |
- perl? ( dev-lang/perl ) |
292 |
- png? ( media-libs/libpng:0= ) |
293 |
- readline? ( sys-libs/readline:0= ) |
294 |
- tiff? ( media-libs/tiff:0= ) |
295 |
- tk? ( dev-lang/tk:0= ) |
296 |
- X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )" |
297 |
- |
298 |
-DEPEND="${CDEPEND} |
299 |
- virtual/pkgconfig |
300 |
- doc? ( |
301 |
- virtual/latex-base |
302 |
- dev-texlive/texlive-fontsrecommended |
303 |
- )" |
304 |
- |
305 |
-RDEPEND="${CDEPEND} |
306 |
- ( || ( <sys-libs/zlib-1.2.5.1-r1:0 >=sys-libs/zlib-1.2.5.1-r2:0[minizip] ) ) |
307 |
- java? ( >=virtual/jre-1.5 )" |
308 |
- |
309 |
-RESTRICT="minimal? ( test )" |
310 |
- |
311 |
-R_DIR="${EROOT%/}/usr/$(get_libdir)/${PN}" |
312 |
- |
313 |
-pkg_setup() { |
314 |
- if use openmp; then |
315 |
- if [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then |
316 |
- ewarn "OpenMP is not available in your current selected gcc" |
317 |
- die "need openmp capable gcc" |
318 |
- fi |
319 |
- FORTRAN_NEED_OPENMP=1 |
320 |
- fi |
321 |
- fortran-2_pkg_setup |
322 |
- filter-ldflags -Wl,-Bdirect -Bdirect |
323 |
- # avoid using existing R installation |
324 |
- unset R_HOME |
325 |
- # Temporary fix for bug #419761 |
326 |
- if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then |
327 |
- append-flags -fno-ipa-cp-clone |
328 |
- fi |
329 |
-} |
330 |
- |
331 |
-src_prepare() { |
332 |
- epatch \ |
333 |
- "${FILESDIR}"/${PN}-2.11.1-parallel.patch \ |
334 |
- "${FILESDIR}"/${PN}-2.13.1-zlib_header_fix.patch \ |
335 |
- "${FILESDIR}"/${PN}-3.0.0-rmath-shared.patch |
336 |
- |
337 |
- # fix packages.html for doc (gentoo bug #205103) |
338 |
- sed -i \ |
339 |
- -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \ |
340 |
- src/library/tools/R/Rd.R || die |
341 |
- |
342 |
- # fix Rscript path when installed (gentoo bug #221061) |
343 |
- sed -i \ |
344 |
- -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${R_DIR}\"':" \ |
345 |
- src/unix/Makefile.in || die "sed unix Makefile failed" |
346 |
- |
347 |
- # fix HTML links to manual (gentoo bug #273957) |
348 |
- sed -i \ |
349 |
- -e 's:\.\./manual/:manual/:g' \ |
350 |
- $(grep -Flr ../manual/ doc) || die "sed for HTML links failed" |
351 |
- |
352 |
- use lapack && \ |
353 |
- export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)" |
354 |
- |
355 |
- if use X; then |
356 |
- export R_BROWSER="$(type -p xdg-open)" |
357 |
- export R_PDFVIEWER="$(type -p xdg-open)" |
358 |
- fi |
359 |
- use perl && \ |
360 |
- export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}" |
361 |
- |
362 |
- # don't search /usr/local |
363 |
- sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die |
364 |
- # Fix for Darwin (OS X) |
365 |
- if use prefix; then |
366 |
- if [[ ${CHOST} == *-darwin* ]] ; then |
367 |
- sed -i \ |
368 |
- -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \ |
369 |
- -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \ |
370 |
- -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \ |
371 |
- -e "/SHLIB_EXT/s/\.so/.dylib/" \ |
372 |
- configure.ac || die |
373 |
- # sort of "undo" 2.14.1-rmath-shared.patch |
374 |
- sed -i \ |
375 |
- -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT%/}/usr/$(get_libdir)/libRmath.dylib:" \ |
376 |
- src/nmath/standalone/Makefile.in || die |
377 |
- else |
378 |
- append-ldflags -Wl,-rpath="${EROOT%/}/usr/$(get_libdir)/R/lib" |
379 |
- fi |
380 |
- fi |
381 |
- AT_M4DIR=m4 eaclocal |
382 |
- eautoconf |
383 |
-} |
384 |
- |
385 |
-src_configure() { |
386 |
- econf \ |
387 |
- --enable-byte-compiled-packages \ |
388 |
- --enable-R-shlib \ |
389 |
- --disable-R-framework \ |
390 |
- --with-system-zlib \ |
391 |
- --with-system-bzlib \ |
392 |
- --with-system-pcre \ |
393 |
- --with-system-xz \ |
394 |
- --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \ |
395 |
- --docdir="${EPREFIX}/usr/share/doc/${PF}" \ |
396 |
- rdocdir="${EPREFIX}/usr/share/doc/${PF}" \ |
397 |
- $(use_enable nls) \ |
398 |
- $(use_enable openmp) \ |
399 |
- $(use_enable profile R-profiling) \ |
400 |
- $(use_enable profile memory-profiling) \ |
401 |
- $(use_enable static-libs static) \ |
402 |
- $(use_enable static-libs R-static-lib) \ |
403 |
- $(use_with cairo) \ |
404 |
- $(use_with icu ICU) \ |
405 |
- $(use_with jpeg jpeglib) \ |
406 |
- $(use_with lapack) \ |
407 |
- $(use_with !minimal recommended-packages) \ |
408 |
- $(use_with png libpng) \ |
409 |
- $(use_with readline) \ |
410 |
- $(use_with tiff libtiff) \ |
411 |
- $(use_with tk tcltk) \ |
412 |
- $(use_with tk tk-config "${EPREFIX}"/usr/lib/tkConfig.sh) \ |
413 |
- $(use_with tk tcl-config "${EPREFIX}"/usr/lib/tclConfig.sh) \ |
414 |
- $(use_with X x) |
415 |
-} |
416 |
- |
417 |
-src_compile() { |
418 |
- export VARTEXFONTS="${T}/fonts" |
419 |
- emake AR="$(tc-getAR)" |
420 |
- emake -C src/nmath/standalone shared $(use static-libs && echo static) AR="$(tc-getAR)" |
421 |
- use doc && emake info pdf |
422 |
-} |
423 |
- |
424 |
-src_install() { |
425 |
- default |
426 |
- emake -j1 -C src/nmath/standalone DESTDIR="${D}" install |
427 |
- |
428 |
- if use doc; then |
429 |
- emake DESTDIR="${D}" install-info install-pdf |
430 |
- dosym ../manual /usr/share/doc/${PF}/html/manual |
431 |
- fi |
432 |
- |
433 |
- cat > 99R <<-EOF |
434 |
- LDPATH=${R_DIR}/lib |
435 |
- R_HOME=${R_DIR} |
436 |
- EOF |
437 |
- doenvd 99R |
438 |
- use bash-completion && newbashcomp "${WORKDIR}"/${BCP} ${PN} |
439 |
- # The buildsystem has a different understanding of install_names than what |
440 |
- # we require. Since it builds modules like shared objects (wrong), many |
441 |
- # objects (all modules) get an incorrect install_name. Fixing the build |
442 |
- # system here is not really trivial. |
443 |
- if [[ ${CHOST} == *-darwin* ]] ; then |
444 |
- local mod |
445 |
- pushd "${ED}"/usr/lib/R > /dev/null |
446 |
- for mod in $(find . -name "*.dylib") ; do |
447 |
- mod=${mod#./} |
448 |
- install_name_tool -id "${EPREFIX}/usr/lib/R/${mod}" \ |
449 |
- "${mod}" |
450 |
- done |
451 |
- popd > /dev/null |
452 |
- fi |
453 |
- docompress -x /usr/share/doc/${PF}/NEWS.rds |
454 |
-} |
455 |
- |
456 |
-pkg_postinst() { |
457 |
- if use java; then |
458 |
- einfo "Re-initializing java paths for ${P}" |
459 |
- R CMD javareconf |
460 |
- fi |
461 |
-} |
462 |
|
463 |
diff --git a/dev-lang/R/R-3.1.0.ebuild b/dev-lang/R/R-3.1.0.ebuild |
464 |
deleted file mode 100644 |
465 |
index 7d9ebb0..0000000 |
466 |
--- a/dev-lang/R/R-3.1.0.ebuild |
467 |
+++ /dev/null |
468 |
@@ -1,206 +0,0 @@ |
469 |
-# Copyright 1999-2014 Gentoo Foundation |
470 |
-# Distributed under the terms of the GNU General Public License v2 |
471 |
-# $Id$ |
472 |
- |
473 |
-EAPI=5 |
474 |
- |
475 |
-inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib versionator toolchain-funcs |
476 |
- |
477 |
-BCP=${PN}-20130129.bash_completion |
478 |
-DESCRIPTION="Language and environment for statistical computing and graphics" |
479 |
-HOMEPAGE="http://www.r-project.org/" |
480 |
-SRC_URI=" |
481 |
- mirror://cran/src/base/R-3/${P}.tar.gz |
482 |
- bash-completion? ( https://dev.gentoo.org/~bicatali/distfiles/${BCP}.bz2 )" |
483 |
- |
484 |
-LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1" |
485 |
-SLOT="0" |
486 |
-KEYWORDS="~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos" |
487 |
-IUSE="bash-completion cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X" |
488 |
-REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )" |
489 |
- |
490 |
-CDEPEND=" |
491 |
- app-arch/bzip2:0= |
492 |
- app-arch/xz-utils:0= |
493 |
- app-text/ghostscript-gpl |
494 |
- dev-libs/libpcre:3= |
495 |
- virtual/blas:0 |
496 |
- || ( >=sys-apps/coreutils-8.15 sys-freebsd/freebsd-bin app-misc/realpath ) |
497 |
- cairo? ( x11-libs/cairo:0=[X] x11-libs/pango:0= ) |
498 |
- icu? ( dev-libs/icu:= ) |
499 |
- jpeg? ( virtual/jpeg:0 ) |
500 |
- lapack? ( virtual/lapack:0 ) |
501 |
- perl? ( dev-lang/perl ) |
502 |
- png? ( media-libs/libpng:0= ) |
503 |
- readline? ( sys-libs/readline:0= ) |
504 |
- tiff? ( media-libs/tiff:0= ) |
505 |
- tk? ( dev-lang/tk:0= ) |
506 |
- X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )" |
507 |
- |
508 |
-DEPEND="${CDEPEND} |
509 |
- virtual/pkgconfig |
510 |
- doc? ( |
511 |
- virtual/latex-base |
512 |
- dev-texlive/texlive-fontsrecommended |
513 |
- )" |
514 |
- |
515 |
-RDEPEND="${CDEPEND} |
516 |
- ( || ( <sys-libs/zlib-1.2.5.1-r1:0 >=sys-libs/zlib-1.2.5.1-r2:0[minizip] ) ) |
517 |
- java? ( >=virtual/jre-1.5 )" |
518 |
- |
519 |
-RESTRICT="minimal? ( test )" |
520 |
- |
521 |
-R_DIR="${EROOT%/}/usr/$(get_libdir)/${PN}" |
522 |
- |
523 |
-pkg_setup() { |
524 |
- if use openmp; then |
525 |
- if [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then |
526 |
- ewarn "OpenMP is not available in your current selected gcc" |
527 |
- die "need openmp capable gcc" |
528 |
- fi |
529 |
- FORTRAN_NEED_OPENMP=1 |
530 |
- fi |
531 |
- fortran-2_pkg_setup |
532 |
- filter-ldflags -Wl,-Bdirect -Bdirect |
533 |
- # avoid using existing R installation |
534 |
- unset R_HOME |
535 |
- # Temporary fix for bug #419761 |
536 |
- if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then |
537 |
- append-flags -fno-ipa-cp-clone |
538 |
- fi |
539 |
-} |
540 |
- |
541 |
-src_prepare() { |
542 |
- epatch \ |
543 |
- "${FILESDIR}"/${PN}-2.11.1-parallel.patch \ |
544 |
- "${FILESDIR}"/${PN}-2.13.1-zlib_header_fix.patch \ |
545 |
- "${FILESDIR}"/${PN}-3.0.0-rmath-shared.patch |
546 |
- |
547 |
- # fix packages.html for doc (gentoo bug #205103) |
548 |
- sed -i \ |
549 |
- -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \ |
550 |
- src/library/tools/R/Rd.R || die |
551 |
- |
552 |
- # fix Rscript path when installed (gentoo bug #221061) |
553 |
- sed -i \ |
554 |
- -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${R_DIR}\"':" \ |
555 |
- src/unix/Makefile.in || die "sed unix Makefile failed" |
556 |
- |
557 |
- # fix HTML links to manual (gentoo bug #273957) |
558 |
- sed -i \ |
559 |
- -e 's:\.\./manual/:manual/:g' \ |
560 |
- $(grep -Flr ../manual/ doc) || die "sed for HTML links failed" |
561 |
- |
562 |
- use lapack && \ |
563 |
- export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)" |
564 |
- |
565 |
- if use X; then |
566 |
- export R_BROWSER="$(type -p xdg-open)" |
567 |
- export R_PDFVIEWER="$(type -p xdg-open)" |
568 |
- fi |
569 |
- use perl && \ |
570 |
- export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}" |
571 |
- |
572 |
- # don't search /usr/local |
573 |
- sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die |
574 |
- # Fix for Darwin (OS X) |
575 |
- if use prefix; then |
576 |
- if [[ ${CHOST} == *-darwin* ]] ; then |
577 |
- sed -i \ |
578 |
- -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \ |
579 |
- -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \ |
580 |
- -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \ |
581 |
- -e "/SHLIB_EXT/s/\.so/.dylib/" \ |
582 |
- configure.ac || die |
583 |
- # sort of "undo" 2.14.1-rmath-shared.patch |
584 |
- sed -i \ |
585 |
- -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT%/}/usr/$(get_libdir)/libRmath.dylib:" \ |
586 |
- src/nmath/standalone/Makefile.in || die |
587 |
- else |
588 |
- append-ldflags -Wl,-rpath="${EROOT%/}/usr/$(get_libdir)/R/lib" |
589 |
- fi |
590 |
- fi |
591 |
- AT_M4DIR=m4 eaclocal |
592 |
- eautoconf |
593 |
-} |
594 |
- |
595 |
-src_configure() { |
596 |
- # --with-system-tre \ |
597 |
- # tre is patched from upstream |
598 |
- econf \ |
599 |
- --enable-byte-compiled-packages \ |
600 |
- --enable-R-shlib \ |
601 |
- --disable-R-framework \ |
602 |
- --with-system-zlib \ |
603 |
- --with-system-bzlib \ |
604 |
- --with-system-pcre \ |
605 |
- --with-system-xz \ |
606 |
- --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \ |
607 |
- --docdir="${EPREFIX}/usr/share/doc/${PF}" \ |
608 |
- rdocdir="${EPREFIX}/usr/share/doc/${PF}" \ |
609 |
- $(use_enable nls) \ |
610 |
- $(use_enable openmp) \ |
611 |
- $(use_enable profile R-profiling) \ |
612 |
- $(use_enable profile memory-profiling) \ |
613 |
- $(use_enable static-libs static) \ |
614 |
- $(use_enable static-libs R-static-lib) \ |
615 |
- $(use_with cairo) \ |
616 |
- $(use_with icu ICU) \ |
617 |
- $(use_with jpeg jpeglib) \ |
618 |
- $(use_with lapack) \ |
619 |
- $(use_with !minimal recommended-packages) \ |
620 |
- $(use_with png libpng) \ |
621 |
- $(use_with readline) \ |
622 |
- $(use_with tiff libtiff) \ |
623 |
- $(use_with tk tcltk) \ |
624 |
- $(use_with tk tk-config "${EPREFIX}"/usr/lib/tkConfig.sh) \ |
625 |
- $(use_with tk tcl-config "${EPREFIX}"/usr/lib/tclConfig.sh) \ |
626 |
- $(use_with X x) |
627 |
-} |
628 |
- |
629 |
-src_compile() { |
630 |
- export VARTEXFONTS="${T}/fonts" |
631 |
- emake AR="$(tc-getAR)" |
632 |
- emake -C src/nmath/standalone \ |
633 |
- shared $(use static-libs && echo static) AR="$(tc-getAR)" |
634 |
- use doc && emake info pdf |
635 |
-} |
636 |
- |
637 |
-src_install() { |
638 |
- default |
639 |
- emake -j1 -C src/nmath/standalone DESTDIR="${D}" install |
640 |
- |
641 |
- if use doc; then |
642 |
- emake DESTDIR="${D}" install-info install-pdf |
643 |
- dosym ../manual /usr/share/doc/${PF}/html/manual |
644 |
- fi |
645 |
- |
646 |
- cat > 99R <<-EOF |
647 |
- LDPATH=${R_DIR}/lib |
648 |
- R_HOME=${R_DIR} |
649 |
- EOF |
650 |
- doenvd 99R |
651 |
- use bash-completion && newbashcomp "${WORKDIR}"/${BCP} ${PN} |
652 |
- # The buildsystem has a different understanding of install_names than |
653 |
- # we require. Since it builds modules like shared objects (wrong), many |
654 |
- # objects (all modules) get an incorrect install_name. Fixing the build |
655 |
- # system here is not really trivial. |
656 |
- if [[ ${CHOST} == *-darwin* ]] ; then |
657 |
- local mod |
658 |
- pushd "${ED}"/usr/lib/R > /dev/null |
659 |
- for mod in $(find . -name "*.dylib") ; do |
660 |
- mod=${mod#./} |
661 |
- install_name_tool -id "${EPREFIX}/usr/lib/R/${mod}" \ |
662 |
- "${mod}" |
663 |
- done |
664 |
- popd > /dev/null |
665 |
- fi |
666 |
- docompress -x /usr/share/doc/${PF}/NEWS.rds |
667 |
-} |
668 |
- |
669 |
-pkg_postinst() { |
670 |
- if use java; then |
671 |
- einfo "Re-initializing java paths for ${P}" |
672 |
- R CMD javareconf |
673 |
- fi |
674 |
-} |
675 |
|
676 |
diff --git a/dev-lang/R/R-3.1.1.ebuild b/dev-lang/R/R-3.1.1.ebuild |
677 |
deleted file mode 100644 |
678 |
index 7ab8cdd..0000000 |
679 |
--- a/dev-lang/R/R-3.1.1.ebuild |
680 |
+++ /dev/null |
681 |
@@ -1,206 +0,0 @@ |
682 |
-# Copyright 1999-2014 Gentoo Foundation |
683 |
-# Distributed under the terms of the GNU General Public License v2 |
684 |
-# $Id$ |
685 |
- |
686 |
-EAPI=5 |
687 |
- |
688 |
-inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib versionator toolchain-funcs |
689 |
- |
690 |
-BCP=${PN}-20130129.bash_completion |
691 |
-DESCRIPTION="Language and environment for statistical computing and graphics" |
692 |
-HOMEPAGE="http://www.r-project.org/" |
693 |
-SRC_URI=" |
694 |
- mirror://cran/src/base/R-3/${P}.tar.gz |
695 |
- https://dev.gentoo.org/~bicatali/distfiles/${BCP}.bz2" |
696 |
- |
697 |
-LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1" |
698 |
-SLOT="0" |
699 |
-KEYWORDS="~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos" |
700 |
-IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X" |
701 |
-REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )" |
702 |
- |
703 |
-CDEPEND=" |
704 |
- app-arch/bzip2:0= |
705 |
- app-arch/xz-utils:0= |
706 |
- app-text/ghostscript-gpl |
707 |
- >=dev-libs/libpcre-8.35:3= |
708 |
- virtual/blas:0 |
709 |
- || ( >=sys-apps/coreutils-8.15 sys-freebsd/freebsd-bin app-misc/realpath ) |
710 |
- cairo? ( x11-libs/cairo:0=[X] x11-libs/pango:0= ) |
711 |
- icu? ( dev-libs/icu:= ) |
712 |
- jpeg? ( virtual/jpeg:0 ) |
713 |
- lapack? ( virtual/lapack:0 ) |
714 |
- perl? ( dev-lang/perl ) |
715 |
- png? ( media-libs/libpng:0= ) |
716 |
- readline? ( sys-libs/readline:0= ) |
717 |
- tiff? ( media-libs/tiff:0= ) |
718 |
- tk? ( dev-lang/tk:0= ) |
719 |
- X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )" |
720 |
- |
721 |
-DEPEND="${CDEPEND} |
722 |
- virtual/pkgconfig |
723 |
- doc? ( |
724 |
- virtual/latex-base |
725 |
- dev-texlive/texlive-fontsrecommended |
726 |
- )" |
727 |
- |
728 |
-RDEPEND="${CDEPEND} |
729 |
- ( || ( <sys-libs/zlib-1.2.5.1-r1:0 >=sys-libs/zlib-1.2.5.1-r2:0[minizip] ) ) |
730 |
- java? ( >=virtual/jre-1.5 )" |
731 |
- |
732 |
-RESTRICT="minimal? ( test )" |
733 |
- |
734 |
-R_DIR="${EROOT%/}/usr/$(get_libdir)/${PN}" |
735 |
- |
736 |
-pkg_setup() { |
737 |
- if use openmp; then |
738 |
- if [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then |
739 |
- ewarn "OpenMP is not available in your current selected gcc" |
740 |
- die "need openmp capable gcc" |
741 |
- fi |
742 |
- FORTRAN_NEED_OPENMP=1 |
743 |
- fi |
744 |
- fortran-2_pkg_setup |
745 |
- filter-ldflags -Wl,-Bdirect -Bdirect |
746 |
- # avoid using existing R installation |
747 |
- unset R_HOME |
748 |
- # Temporary fix for bug #419761 |
749 |
- if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then |
750 |
- append-flags -fno-ipa-cp-clone |
751 |
- fi |
752 |
-} |
753 |
- |
754 |
-src_prepare() { |
755 |
- epatch \ |
756 |
- "${FILESDIR}"/${PN}-2.11.1-parallel.patch \ |
757 |
- "${FILESDIR}"/${PN}-2.13.1-zlib_header_fix.patch \ |
758 |
- "${FILESDIR}"/${PN}-3.0.0-rmath-shared.patch |
759 |
- |
760 |
- # fix packages.html for doc (gentoo bug #205103) |
761 |
- sed -i \ |
762 |
- -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \ |
763 |
- src/library/tools/R/Rd.R || die |
764 |
- |
765 |
- # fix Rscript path when installed (gentoo bug #221061) |
766 |
- sed -i \ |
767 |
- -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${R_DIR}\"':" \ |
768 |
- src/unix/Makefile.in || die "sed unix Makefile failed" |
769 |
- |
770 |
- # fix HTML links to manual (gentoo bug #273957) |
771 |
- sed -i \ |
772 |
- -e 's:\.\./manual/:manual/:g' \ |
773 |
- $(grep -Flr ../manual/ doc) || die "sed for HTML links failed" |
774 |
- |
775 |
- use lapack && \ |
776 |
- export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)" |
777 |
- |
778 |
- if use X; then |
779 |
- export R_BROWSER="$(type -p xdg-open)" |
780 |
- export R_PDFVIEWER="$(type -p xdg-open)" |
781 |
- fi |
782 |
- use perl && \ |
783 |
- export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}" |
784 |
- |
785 |
- # don't search /usr/local |
786 |
- sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die |
787 |
- # Fix for Darwin (OS X) |
788 |
- if use prefix; then |
789 |
- if [[ ${CHOST} == *-darwin* ]] ; then |
790 |
- sed -i \ |
791 |
- -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \ |
792 |
- -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \ |
793 |
- -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \ |
794 |
- -e "/SHLIB_EXT/s/\.so/.dylib/" \ |
795 |
- configure.ac || die |
796 |
- # sort of "undo" 2.14.1-rmath-shared.patch |
797 |
- sed -i \ |
798 |
- -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT%/}/usr/$(get_libdir)/libRmath.dylib:" \ |
799 |
- src/nmath/standalone/Makefile.in || die |
800 |
- else |
801 |
- append-ldflags -Wl,-rpath="${EROOT%/}/usr/$(get_libdir)/R/lib" |
802 |
- fi |
803 |
- fi |
804 |
- AT_M4DIR=m4 eaclocal |
805 |
- eautoconf |
806 |
-} |
807 |
- |
808 |
-src_configure() { |
809 |
- # --with-system-tre \ |
810 |
- # tre is patched from upstream |
811 |
- econf \ |
812 |
- --enable-byte-compiled-packages \ |
813 |
- --enable-R-shlib \ |
814 |
- --disable-R-framework \ |
815 |
- --with-system-zlib \ |
816 |
- --with-system-bzlib \ |
817 |
- --with-system-pcre \ |
818 |
- --with-system-xz \ |
819 |
- --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \ |
820 |
- --docdir="${EPREFIX}/usr/share/doc/${PF}" \ |
821 |
- rdocdir="${EPREFIX}/usr/share/doc/${PF}" \ |
822 |
- $(use_enable nls) \ |
823 |
- $(use_enable openmp) \ |
824 |
- $(use_enable profile R-profiling) \ |
825 |
- $(use_enable profile memory-profiling) \ |
826 |
- $(use_enable static-libs static) \ |
827 |
- $(use_enable static-libs R-static-lib) \ |
828 |
- $(use_with cairo) \ |
829 |
- $(use_with icu ICU) \ |
830 |
- $(use_with jpeg jpeglib) \ |
831 |
- $(use_with lapack) \ |
832 |
- $(use_with !minimal recommended-packages) \ |
833 |
- $(use_with png libpng) \ |
834 |
- $(use_with readline) \ |
835 |
- $(use_with tiff libtiff) \ |
836 |
- $(use_with tk tcltk) \ |
837 |
- $(use_with tk tk-config "${EPREFIX}"/usr/lib/tkConfig.sh) \ |
838 |
- $(use_with tk tcl-config "${EPREFIX}"/usr/lib/tclConfig.sh) \ |
839 |
- $(use_with X x) |
840 |
-} |
841 |
- |
842 |
-src_compile() { |
843 |
- export VARTEXFONTS="${T}/fonts" |
844 |
- emake AR="$(tc-getAR)" |
845 |
- emake -C src/nmath/standalone \ |
846 |
- shared $(use static-libs && echo static) AR="$(tc-getAR)" |
847 |
- use doc && emake info pdf |
848 |
-} |
849 |
- |
850 |
-src_install() { |
851 |
- default |
852 |
- emake -j1 -C src/nmath/standalone DESTDIR="${D}" install |
853 |
- |
854 |
- if use doc; then |
855 |
- emake DESTDIR="${D}" install-info install-pdf |
856 |
- dosym ../manual /usr/share/doc/${PF}/html/manual |
857 |
- fi |
858 |
- |
859 |
- cat > 99R <<-EOF |
860 |
- LDPATH=${R_DIR}/lib |
861 |
- R_HOME=${R_DIR} |
862 |
- EOF |
863 |
- doenvd 99R |
864 |
- newbashcomp "${WORKDIR}"/${BCP} ${PN} |
865 |
- # The buildsystem has a different understanding of install_names than |
866 |
- # we require. Since it builds modules like shared objects (wrong), many |
867 |
- # objects (all modules) get an incorrect install_name. Fixing the build |
868 |
- # system here is not really trivial. |
869 |
- if [[ ${CHOST} == *-darwin* ]] ; then |
870 |
- local mod |
871 |
- pushd "${ED}"/usr/lib/R > /dev/null |
872 |
- for mod in $(find . -name "*.dylib") ; do |
873 |
- mod=${mod#./} |
874 |
- install_name_tool -id "${EPREFIX}/usr/lib/R/${mod}" \ |
875 |
- "${mod}" |
876 |
- done |
877 |
- popd > /dev/null |
878 |
- fi |
879 |
- docompress -x /usr/share/doc/${PF}/NEWS.rds |
880 |
-} |
881 |
- |
882 |
-pkg_postinst() { |
883 |
- if use java; then |
884 |
- einfo "Re-initializing java paths for ${P}" |
885 |
- R CMD javareconf |
886 |
- fi |
887 |
-} |
888 |
|
889 |
diff --git a/dev-lang/R/R-3.1.2.ebuild b/dev-lang/R/R-3.1.2.ebuild |
890 |
deleted file mode 100644 |
891 |
index 7ab8cdd..0000000 |
892 |
--- a/dev-lang/R/R-3.1.2.ebuild |
893 |
+++ /dev/null |
894 |
@@ -1,206 +0,0 @@ |
895 |
-# Copyright 1999-2014 Gentoo Foundation |
896 |
-# Distributed under the terms of the GNU General Public License v2 |
897 |
-# $Id$ |
898 |
- |
899 |
-EAPI=5 |
900 |
- |
901 |
-inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib versionator toolchain-funcs |
902 |
- |
903 |
-BCP=${PN}-20130129.bash_completion |
904 |
-DESCRIPTION="Language and environment for statistical computing and graphics" |
905 |
-HOMEPAGE="http://www.r-project.org/" |
906 |
-SRC_URI=" |
907 |
- mirror://cran/src/base/R-3/${P}.tar.gz |
908 |
- https://dev.gentoo.org/~bicatali/distfiles/${BCP}.bz2" |
909 |
- |
910 |
-LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1" |
911 |
-SLOT="0" |
912 |
-KEYWORDS="~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos" |
913 |
-IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X" |
914 |
-REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )" |
915 |
- |
916 |
-CDEPEND=" |
917 |
- app-arch/bzip2:0= |
918 |
- app-arch/xz-utils:0= |
919 |
- app-text/ghostscript-gpl |
920 |
- >=dev-libs/libpcre-8.35:3= |
921 |
- virtual/blas:0 |
922 |
- || ( >=sys-apps/coreutils-8.15 sys-freebsd/freebsd-bin app-misc/realpath ) |
923 |
- cairo? ( x11-libs/cairo:0=[X] x11-libs/pango:0= ) |
924 |
- icu? ( dev-libs/icu:= ) |
925 |
- jpeg? ( virtual/jpeg:0 ) |
926 |
- lapack? ( virtual/lapack:0 ) |
927 |
- perl? ( dev-lang/perl ) |
928 |
- png? ( media-libs/libpng:0= ) |
929 |
- readline? ( sys-libs/readline:0= ) |
930 |
- tiff? ( media-libs/tiff:0= ) |
931 |
- tk? ( dev-lang/tk:0= ) |
932 |
- X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )" |
933 |
- |
934 |
-DEPEND="${CDEPEND} |
935 |
- virtual/pkgconfig |
936 |
- doc? ( |
937 |
- virtual/latex-base |
938 |
- dev-texlive/texlive-fontsrecommended |
939 |
- )" |
940 |
- |
941 |
-RDEPEND="${CDEPEND} |
942 |
- ( || ( <sys-libs/zlib-1.2.5.1-r1:0 >=sys-libs/zlib-1.2.5.1-r2:0[minizip] ) ) |
943 |
- java? ( >=virtual/jre-1.5 )" |
944 |
- |
945 |
-RESTRICT="minimal? ( test )" |
946 |
- |
947 |
-R_DIR="${EROOT%/}/usr/$(get_libdir)/${PN}" |
948 |
- |
949 |
-pkg_setup() { |
950 |
- if use openmp; then |
951 |
- if [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then |
952 |
- ewarn "OpenMP is not available in your current selected gcc" |
953 |
- die "need openmp capable gcc" |
954 |
- fi |
955 |
- FORTRAN_NEED_OPENMP=1 |
956 |
- fi |
957 |
- fortran-2_pkg_setup |
958 |
- filter-ldflags -Wl,-Bdirect -Bdirect |
959 |
- # avoid using existing R installation |
960 |
- unset R_HOME |
961 |
- # Temporary fix for bug #419761 |
962 |
- if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then |
963 |
- append-flags -fno-ipa-cp-clone |
964 |
- fi |
965 |
-} |
966 |
- |
967 |
-src_prepare() { |
968 |
- epatch \ |
969 |
- "${FILESDIR}"/${PN}-2.11.1-parallel.patch \ |
970 |
- "${FILESDIR}"/${PN}-2.13.1-zlib_header_fix.patch \ |
971 |
- "${FILESDIR}"/${PN}-3.0.0-rmath-shared.patch |
972 |
- |
973 |
- # fix packages.html for doc (gentoo bug #205103) |
974 |
- sed -i \ |
975 |
- -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \ |
976 |
- src/library/tools/R/Rd.R || die |
977 |
- |
978 |
- # fix Rscript path when installed (gentoo bug #221061) |
979 |
- sed -i \ |
980 |
- -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${R_DIR}\"':" \ |
981 |
- src/unix/Makefile.in || die "sed unix Makefile failed" |
982 |
- |
983 |
- # fix HTML links to manual (gentoo bug #273957) |
984 |
- sed -i \ |
985 |
- -e 's:\.\./manual/:manual/:g' \ |
986 |
- $(grep -Flr ../manual/ doc) || die "sed for HTML links failed" |
987 |
- |
988 |
- use lapack && \ |
989 |
- export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)" |
990 |
- |
991 |
- if use X; then |
992 |
- export R_BROWSER="$(type -p xdg-open)" |
993 |
- export R_PDFVIEWER="$(type -p xdg-open)" |
994 |
- fi |
995 |
- use perl && \ |
996 |
- export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}" |
997 |
- |
998 |
- # don't search /usr/local |
999 |
- sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die |
1000 |
- # Fix for Darwin (OS X) |
1001 |
- if use prefix; then |
1002 |
- if [[ ${CHOST} == *-darwin* ]] ; then |
1003 |
- sed -i \ |
1004 |
- -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \ |
1005 |
- -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \ |
1006 |
- -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \ |
1007 |
- -e "/SHLIB_EXT/s/\.so/.dylib/" \ |
1008 |
- configure.ac || die |
1009 |
- # sort of "undo" 2.14.1-rmath-shared.patch |
1010 |
- sed -i \ |
1011 |
- -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT%/}/usr/$(get_libdir)/libRmath.dylib:" \ |
1012 |
- src/nmath/standalone/Makefile.in || die |
1013 |
- else |
1014 |
- append-ldflags -Wl,-rpath="${EROOT%/}/usr/$(get_libdir)/R/lib" |
1015 |
- fi |
1016 |
- fi |
1017 |
- AT_M4DIR=m4 eaclocal |
1018 |
- eautoconf |
1019 |
-} |
1020 |
- |
1021 |
-src_configure() { |
1022 |
- # --with-system-tre \ |
1023 |
- # tre is patched from upstream |
1024 |
- econf \ |
1025 |
- --enable-byte-compiled-packages \ |
1026 |
- --enable-R-shlib \ |
1027 |
- --disable-R-framework \ |
1028 |
- --with-system-zlib \ |
1029 |
- --with-system-bzlib \ |
1030 |
- --with-system-pcre \ |
1031 |
- --with-system-xz \ |
1032 |
- --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \ |
1033 |
- --docdir="${EPREFIX}/usr/share/doc/${PF}" \ |
1034 |
- rdocdir="${EPREFIX}/usr/share/doc/${PF}" \ |
1035 |
- $(use_enable nls) \ |
1036 |
- $(use_enable openmp) \ |
1037 |
- $(use_enable profile R-profiling) \ |
1038 |
- $(use_enable profile memory-profiling) \ |
1039 |
- $(use_enable static-libs static) \ |
1040 |
- $(use_enable static-libs R-static-lib) \ |
1041 |
- $(use_with cairo) \ |
1042 |
- $(use_with icu ICU) \ |
1043 |
- $(use_with jpeg jpeglib) \ |
1044 |
- $(use_with lapack) \ |
1045 |
- $(use_with !minimal recommended-packages) \ |
1046 |
- $(use_with png libpng) \ |
1047 |
- $(use_with readline) \ |
1048 |
- $(use_with tiff libtiff) \ |
1049 |
- $(use_with tk tcltk) \ |
1050 |
- $(use_with tk tk-config "${EPREFIX}"/usr/lib/tkConfig.sh) \ |
1051 |
- $(use_with tk tcl-config "${EPREFIX}"/usr/lib/tclConfig.sh) \ |
1052 |
- $(use_with X x) |
1053 |
-} |
1054 |
- |
1055 |
-src_compile() { |
1056 |
- export VARTEXFONTS="${T}/fonts" |
1057 |
- emake AR="$(tc-getAR)" |
1058 |
- emake -C src/nmath/standalone \ |
1059 |
- shared $(use static-libs && echo static) AR="$(tc-getAR)" |
1060 |
- use doc && emake info pdf |
1061 |
-} |
1062 |
- |
1063 |
-src_install() { |
1064 |
- default |
1065 |
- emake -j1 -C src/nmath/standalone DESTDIR="${D}" install |
1066 |
- |
1067 |
- if use doc; then |
1068 |
- emake DESTDIR="${D}" install-info install-pdf |
1069 |
- dosym ../manual /usr/share/doc/${PF}/html/manual |
1070 |
- fi |
1071 |
- |
1072 |
- cat > 99R <<-EOF |
1073 |
- LDPATH=${R_DIR}/lib |
1074 |
- R_HOME=${R_DIR} |
1075 |
- EOF |
1076 |
- doenvd 99R |
1077 |
- newbashcomp "${WORKDIR}"/${BCP} ${PN} |
1078 |
- # The buildsystem has a different understanding of install_names than |
1079 |
- # we require. Since it builds modules like shared objects (wrong), many |
1080 |
- # objects (all modules) get an incorrect install_name. Fixing the build |
1081 |
- # system here is not really trivial. |
1082 |
- if [[ ${CHOST} == *-darwin* ]] ; then |
1083 |
- local mod |
1084 |
- pushd "${ED}"/usr/lib/R > /dev/null |
1085 |
- for mod in $(find . -name "*.dylib") ; do |
1086 |
- mod=${mod#./} |
1087 |
- install_name_tool -id "${EPREFIX}/usr/lib/R/${mod}" \ |
1088 |
- "${mod}" |
1089 |
- done |
1090 |
- popd > /dev/null |
1091 |
- fi |
1092 |
- docompress -x /usr/share/doc/${PF}/NEWS.rds |
1093 |
-} |
1094 |
- |
1095 |
-pkg_postinst() { |
1096 |
- if use java; then |
1097 |
- einfo "Re-initializing java paths for ${P}" |
1098 |
- R CMD javareconf |
1099 |
- fi |
1100 |
-} |
1101 |
|
1102 |
diff --git a/dev-lang/R/R-3.2.0-r1.ebuild b/dev-lang/R/R-3.2.0-r1.ebuild |
1103 |
deleted file mode 100644 |
1104 |
index 9c874f3..0000000 |
1105 |
--- a/dev-lang/R/R-3.2.0-r1.ebuild |
1106 |
+++ /dev/null |
1107 |
@@ -1,207 +0,0 @@ |
1108 |
-# Copyright 1999-2015 Gentoo Foundation |
1109 |
-# Distributed under the terms of the GNU General Public License v2 |
1110 |
-# $Id$ |
1111 |
- |
1112 |
-EAPI=5 |
1113 |
- |
1114 |
-inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib versionator toolchain-funcs |
1115 |
- |
1116 |
-BCP=${PN}-20130129.bash_completion |
1117 |
-DESCRIPTION="Language and environment for statistical computing and graphics" |
1118 |
-HOMEPAGE="http://www.r-project.org/" |
1119 |
-SRC_URI=" |
1120 |
- mirror://cran/src/base/R-3/${P}.tar.gz |
1121 |
- https://dev.gentoo.org/~bicatali/distfiles/${BCP}.bz2" |
1122 |
- |
1123 |
-LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1" |
1124 |
-SLOT="0" |
1125 |
-KEYWORDS="~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos" |
1126 |
-IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X" |
1127 |
-REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )" |
1128 |
- |
1129 |
-CDEPEND=" |
1130 |
- app-arch/bzip2:0= |
1131 |
- app-arch/xz-utils:0= |
1132 |
- app-text/ghostscript-gpl |
1133 |
- >=dev-libs/libpcre-8.35:3= |
1134 |
- virtual/blas:0 |
1135 |
- || ( >=sys-apps/coreutils-8.15 sys-freebsd/freebsd-bin app-misc/realpath ) |
1136 |
- cairo? ( x11-libs/cairo:0=[X] x11-libs/pango:0= ) |
1137 |
- icu? ( dev-libs/icu:= ) |
1138 |
- jpeg? ( virtual/jpeg:0 ) |
1139 |
- lapack? ( virtual/lapack:0 ) |
1140 |
- perl? ( dev-lang/perl ) |
1141 |
- png? ( media-libs/libpng:0= ) |
1142 |
- readline? ( sys-libs/readline:0= ) |
1143 |
- tiff? ( media-libs/tiff:0= ) |
1144 |
- tk? ( dev-lang/tk:0= ) |
1145 |
- X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )" |
1146 |
- |
1147 |
-DEPEND="${CDEPEND} |
1148 |
- virtual/pkgconfig |
1149 |
- doc? ( |
1150 |
- virtual/latex-base |
1151 |
- dev-texlive/texlive-fontsrecommended |
1152 |
- )" |
1153 |
- |
1154 |
-RDEPEND="${CDEPEND} |
1155 |
- ( || ( <sys-libs/zlib-1.2.5.1-r1:0 >=sys-libs/zlib-1.2.5.1-r2:0[minizip] ) ) |
1156 |
- java? ( >=virtual/jre-1.5 )" |
1157 |
- |
1158 |
-RESTRICT="minimal? ( test )" |
1159 |
- |
1160 |
-R_DIR="${EROOT%/}/usr/$(get_libdir)/${PN}" |
1161 |
- |
1162 |
-pkg_setup() { |
1163 |
- if use openmp; then |
1164 |
- if [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then |
1165 |
- ewarn "OpenMP is not available in your current selected gcc" |
1166 |
- die "need openmp capable gcc" |
1167 |
- fi |
1168 |
- FORTRAN_NEED_OPENMP=1 |
1169 |
- fi |
1170 |
- fortran-2_pkg_setup |
1171 |
- filter-ldflags -Wl,-Bdirect -Bdirect |
1172 |
- # avoid using existing R installation |
1173 |
- unset R_HOME |
1174 |
- # Temporary fix for bug #419761 |
1175 |
- if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then |
1176 |
- append-flags -fno-ipa-cp-clone |
1177 |
- fi |
1178 |
-} |
1179 |
- |
1180 |
-src_prepare() { |
1181 |
- epatch \ |
1182 |
- "${FILESDIR}"/${PN}-2.11.1-parallel.patch \ |
1183 |
- "${FILESDIR}"/${PN}-2.13.1-zlib_header_fix.patch \ |
1184 |
- "${FILESDIR}"/${PN}-3.0.0-rmath-shared.patch \ |
1185 |
- "${FILESDIR}"/${PN}-3.2.0-omitted-extern-R_running_as_main_program.patch |
1186 |
- |
1187 |
- # fix packages.html for doc (gentoo bug #205103) |
1188 |
- sed -i \ |
1189 |
- -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \ |
1190 |
- src/library/tools/R/Rd.R || die |
1191 |
- |
1192 |
- # fix Rscript path when installed (gentoo bug #221061) |
1193 |
- sed -i \ |
1194 |
- -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${R_DIR}\"':" \ |
1195 |
- src/unix/Makefile.in || die "sed unix Makefile failed" |
1196 |
- |
1197 |
- # fix HTML links to manual (gentoo bug #273957) |
1198 |
- sed -i \ |
1199 |
- -e 's:\.\./manual/:manual/:g' \ |
1200 |
- $(grep -Flr ../manual/ doc) || die "sed for HTML links failed" |
1201 |
- |
1202 |
- use lapack && \ |
1203 |
- export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)" |
1204 |
- |
1205 |
- if use X; then |
1206 |
- export R_BROWSER="$(type -p xdg-open)" |
1207 |
- export R_PDFVIEWER="$(type -p xdg-open)" |
1208 |
- fi |
1209 |
- use perl && \ |
1210 |
- export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}" |
1211 |
- |
1212 |
- # don't search /usr/local |
1213 |
- sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die |
1214 |
- # Fix for Darwin (OS X) |
1215 |
- if use prefix; then |
1216 |
- if [[ ${CHOST} == *-darwin* ]] ; then |
1217 |
- sed -i \ |
1218 |
- -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \ |
1219 |
- -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \ |
1220 |
- -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \ |
1221 |
- -e "/SHLIB_EXT/s/\.so/.dylib/" \ |
1222 |
- configure.ac || die |
1223 |
- # sort of "undo" 2.14.1-rmath-shared.patch |
1224 |
- sed -i \ |
1225 |
- -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT%/}/usr/$(get_libdir)/libRmath.dylib:" \ |
1226 |
- src/nmath/standalone/Makefile.in || die |
1227 |
- else |
1228 |
- append-ldflags -Wl,-rpath="${EROOT%/}/usr/$(get_libdir)/R/lib" |
1229 |
- fi |
1230 |
- fi |
1231 |
- AT_M4DIR=m4 eaclocal |
1232 |
- eautoconf |
1233 |
-} |
1234 |
- |
1235 |
-src_configure() { |
1236 |
- # --with-system-tre \ |
1237 |
- # tre is patched from upstream |
1238 |
- econf \ |
1239 |
- --enable-byte-compiled-packages \ |
1240 |
- --enable-R-shlib \ |
1241 |
- --disable-R-framework \ |
1242 |
- --with-system-zlib \ |
1243 |
- --with-system-bzlib \ |
1244 |
- --with-system-pcre \ |
1245 |
- --with-system-xz \ |
1246 |
- --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \ |
1247 |
- --docdir="${EPREFIX}/usr/share/doc/${PF}" \ |
1248 |
- rdocdir="${EPREFIX}/usr/share/doc/${PF}" \ |
1249 |
- $(use_enable nls) \ |
1250 |
- $(use_enable openmp) \ |
1251 |
- $(use_enable profile R-profiling) \ |
1252 |
- $(use_enable profile memory-profiling) \ |
1253 |
- $(use_enable static-libs static) \ |
1254 |
- $(use_enable static-libs R-static-lib) \ |
1255 |
- $(use_with cairo) \ |
1256 |
- $(use_with icu ICU) \ |
1257 |
- $(use_with jpeg jpeglib) \ |
1258 |
- $(use_with lapack) \ |
1259 |
- $(use_with !minimal recommended-packages) \ |
1260 |
- $(use_with png libpng) \ |
1261 |
- $(use_with readline) \ |
1262 |
- $(use_with tiff libtiff) \ |
1263 |
- $(use_with tk tcltk) \ |
1264 |
- $(use_with tk tk-config "${EPREFIX}"/usr/lib/tkConfig.sh) \ |
1265 |
- $(use_with tk tcl-config "${EPREFIX}"/usr/lib/tclConfig.sh) \ |
1266 |
- $(use_with X x) |
1267 |
-} |
1268 |
- |
1269 |
-src_compile() { |
1270 |
- export VARTEXFONTS="${T}/fonts" |
1271 |
- emake AR="$(tc-getAR)" |
1272 |
- emake -C src/nmath/standalone \ |
1273 |
- shared $(use static-libs && echo static) AR="$(tc-getAR)" |
1274 |
- use doc && emake info pdf |
1275 |
-} |
1276 |
- |
1277 |
-src_install() { |
1278 |
- default |
1279 |
- emake -j1 -C src/nmath/standalone DESTDIR="${D}" install |
1280 |
- |
1281 |
- if use doc; then |
1282 |
- emake DESTDIR="${D}" install-info install-pdf |
1283 |
- dosym ../manual /usr/share/doc/${PF}/html/manual |
1284 |
- fi |
1285 |
- |
1286 |
- cat > 99R <<-EOF |
1287 |
- LDPATH=${R_DIR}/lib |
1288 |
- R_HOME=${R_DIR} |
1289 |
- EOF |
1290 |
- doenvd 99R |
1291 |
- newbashcomp "${WORKDIR}"/${BCP} ${PN} |
1292 |
- # The buildsystem has a different understanding of install_names than |
1293 |
- # we require. Since it builds modules like shared objects (wrong), many |
1294 |
- # objects (all modules) get an incorrect install_name. Fixing the build |
1295 |
- # system here is not really trivial. |
1296 |
- if [[ ${CHOST} == *-darwin* ]] ; then |
1297 |
- local mod |
1298 |
- pushd "${ED}"/usr/lib/R > /dev/null |
1299 |
- for mod in $(find . -name "*.dylib") ; do |
1300 |
- mod=${mod#./} |
1301 |
- install_name_tool -id "${EPREFIX}/usr/lib/R/${mod}" \ |
1302 |
- "${mod}" |
1303 |
- done |
1304 |
- popd > /dev/null |
1305 |
- fi |
1306 |
- docompress -x /usr/share/doc/${PF}/NEWS.rds |
1307 |
-} |
1308 |
- |
1309 |
-pkg_postinst() { |
1310 |
- if use java; then |
1311 |
- einfo "Re-initializing java paths for ${P}" |
1312 |
- R CMD javareconf |
1313 |
- fi |
1314 |
-} |
1315 |
|
1316 |
diff --git a/dev-lang/R/R-3.2.2.ebuild b/dev-lang/R/R-3.2.2.ebuild |
1317 |
index de20937..9229648 100644 |
1318 |
--- a/dev-lang/R/R-3.2.2.ebuild |
1319 |
+++ b/dev-lang/R/R-3.2.2.ebuild |
1320 |
@@ -45,7 +45,7 @@ DEPEND="${CDEPEND} |
1321 |
)" |
1322 |
|
1323 |
RDEPEND="${CDEPEND} |
1324 |
- ( || ( <sys-libs/zlib-1.2.5.1-r1:0 >=sys-libs/zlib-1.2.5.1-r2:0[minizip] ) ) |
1325 |
+ >=sys-libs/zlib-1.2.5.1-r2:0[minizip] |
1326 |
java? ( >=virtual/jre-1.5 )" |
1327 |
|
1328 |
RESTRICT="minimal? ( test )" |
1329 |
|
1330 |
diff --git a/dev-lang/R/files/R-2.12.1-ldflags.patch b/dev-lang/R/files/R-2.12.1-ldflags.patch |
1331 |
deleted file mode 100644 |
1332 |
index 2876ac3..0000000 |
1333 |
--- a/dev-lang/R/files/R-2.12.1-ldflags.patch |
1334 |
+++ /dev/null |
1335 |
@@ -1,15 +0,0 @@ |
1336 |
-Respect ldflags on rscript |
1337 |
-Patch by Sebastien Fabbro |
1338 |
-https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=14506 |
1339 |
- |
1340 |
---- src/unix/Makefile.in.orig 2010-12-22 16:58:19.000000000 +0000 |
1341 |
-+++ src/unix/Makefile.in 2010-12-22 16:54:16.000000000 +0000 |
1342 |
-@@ -66,7 +66,7 @@ |
1343 |
- |
1344 |
- ## we need to build at install time to capture the correct 'rhome' |
1345 |
- install-Rscript: |
1346 |
-- $(CC) $(ALL_CPPFLAGS) $(ALL_CFLAGS) -DR_HOME='"$(rhome)"' -o Rscript \ |
1347 |
-+ $(CC) $(ALL_CPPFLAGS) $(ALL_CFLAGS) $(LDFLAGS) -DR_HOME='"$(rhome)"' -o Rscript \ |
1348 |
- $(srcdir)/Rscript.c |
1349 |
- @$(MKINSTALLDIRS) "$(DESTDIR)$(Rexecbindir)" |
1350 |
- @$(INSTALL_PROGRAM) Rscript "$(DESTDIR)$(Rexecbindir)/Rscript" |
1351 |
|
1352 |
diff --git a/dev-lang/R/files/R-2.14.1-rmath-shared.patch b/dev-lang/R/files/R-2.14.1-rmath-shared.patch |
1353 |
deleted file mode 100644 |
1354 |
index c16f20e..0000000 |
1355 |
--- a/dev-lang/R/files/R-2.14.1-rmath-shared.patch |
1356 |
+++ /dev/null |
1357 |
@@ -1,24 +0,0 @@ |
1358 |
-Link with libm to fix unresolved symbols when linked with as-needed |
1359 |
-and add a soname to the standalone math library |
1360 |
-Patch by Sebastien Fabbro |
1361 |
---- src/nmath/standalone/Makefile.in.orig 2010-03-17 14:43:22.000000000 +0000 |
1362 |
-+++ src/nmath/standalone/Makefile.in 2012-01-02 17:40:13.000000000 +0000 |
1363 |
-@@ -64,7 +64,8 @@ |
1364 |
- Rexeclibdir_LTLIBRARIES = $(libRmath_la) |
1365 |
- libRmath_la_SOURCES = $(SOURCES) |
1366 |
- libRmath_la_OBJECTS = $(OBJECTS:.o=.lo) |
1367 |
--libRmath_la_LDFLAGS = |
1368 |
-+libRmath_la_LDFLAGS = -Wl,-soname=libRmath.so |
1369 |
-+libRmath_la_LIBADD = $(LIBM) |
1370 |
- |
1371 |
- CLEANFILES = Makedeps *.d *.o *.lo test $(SOURCES) |
1372 |
- DISTCLEANFILES = Makefile $(Rexeclibdir_LIBRARIES) $(Rexeclibdir_LTLIBRARIES) |
1373 |
-@@ -116,7 +117,7 @@ |
1374 |
- $(RANLIB) $@ |
1375 |
- |
1376 |
- $(libRmath_la): $(libRmath_la_OBJECTS) |
1377 |
-- $(DYLIB_LINK) -o $@ $(libRmath_la_LDFLAGS) $(libRmath_la_OBJECTS) |
1378 |
-+ $(DYLIB_LINK) $(libRmath_la_LDFLAGS) $(libRmath_la_OBJECTS) $(libRmath_la_LIBADD) -o $@ |
1379 |
- |
1380 |
- test: $(srcdir)/test.c |
1381 |
- $(CC) -o $@ $(ALL_CPPFLAGS) $(ALL_CFLAGS) $(srcdir)/test.c \ |
1382 |
|
1383 |
diff --git a/dev-lang/R/files/R-3.2.0-omitted-extern-R_running_as_main_program.patch b/dev-lang/R/files/R-3.2.0-omitted-extern-R_running_as_main_program.patch |
1384 |
deleted file mode 100644 |
1385 |
index eebe508..0000000 |
1386 |
--- a/dev-lang/R/files/R-3.2.0-omitted-extern-R_running_as_main_program.patch |
1387 |
+++ /dev/null |
1388 |
@@ -1,12 +0,0 @@ |
1389 |
---- R-3.2.0-orig/src/include/Rinterface.h 2015-03-19 10:02:16.000000000 +1100 |
1390 |
-+++ R-3.2.0/src/include/Rinterface.h 2015-05-01 23:02:17.541946810 +1000 |
1391 |
-@@ -90,7 +90,8 @@ |
1392 |
- void fpu_setup(Rboolean); |
1393 |
- |
1394 |
- /* in unix/system.c */ |
1395 |
--int R_running_as_main_program; |
1396 |
-+/* Gentoo bug 547478 R bug https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=15899 */ |
1397 |
-+extern int R_running_as_main_program; |
1398 |
- |
1399 |
- #ifdef CSTACK_DEFNS |
1400 |
- /* duplicating Defn.h */ |