From: | "Justin Lecher (jlec)" <jlec@g.o> |
---|---|
To: | gentoo-commits@l.g.o |
Subject: | [gentoo-commits] gentoo-x86 commit in sci-chemistry/refmac: refmac-5.6.0102.ebuild ChangeLog |
Date: | Fri, 28 Jan 2011 15:39:44 |
Message-Id: | 20110128153911.4BB4520057@flycatcher.gentoo.org |
1 | jlec 11/01/28 15:39:11 |
2 | |
3 | Modified: ChangeLog |
4 | Added: refmac-5.6.0102.ebuild |
5 | Log: |
6 | Version Bump |
7 | |
8 | (Portage version: 2.2.0_alpha19/cvs/Linux x86_64) |
9 | |
10 | Revision Changes Path |
11 | 1.41 sci-chemistry/refmac/ChangeLog |
12 | |
13 | file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/refmac/ChangeLog?rev=1.41&view=markup |
14 | plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/refmac/ChangeLog?rev=1.41&content-type=text/plain |
15 | diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/refmac/ChangeLog?r1=1.40&r2=1.41 |
16 | |
17 | Index: ChangeLog |
18 | =================================================================== |
19 | RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/ChangeLog,v |
20 | retrieving revision 1.40 |
21 | retrieving revision 1.41 |
22 | diff -u -r1.40 -r1.41 |
23 | --- ChangeLog 20 Jan 2011 12:12:25 -0000 1.40 |
24 | +++ ChangeLog 28 Jan 2011 15:39:11 -0000 1.41 |
25 | @@ -1,6 +1,12 @@ |
26 | # ChangeLog for sci-chemistry/refmac |
27 | # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 |
28 | -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/ChangeLog,v 1.40 2011/01/20 12:12:25 hwoarang Exp $ |
29 | +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/ChangeLog,v 1.41 2011/01/28 15:39:11 jlec Exp $ |
30 | + |
31 | +*refmac-5.6.0102 (28 Jan 2011) |
32 | + |
33 | + 28 Jan 2011; Justin Lecher <jlec@g.o> |
34 | + +files/5.6.0102-allow-dynamic-linking.patch, +refmac-5.6.0102.ebuild: |
35 | + Version Bump |
36 | |
37 | 20 Jan 2011; Markos Chandras <hwoarang@g.o> refmac-5.5.0110-r2.ebuild: |
38 | Stable on amd64 wrt bug #349587 |
39 | |
40 | |
41 | |
42 | 1.1 sci-chemistry/refmac/refmac-5.6.0102.ebuild |
43 | |
44 | file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/refmac/refmac-5.6.0102.ebuild?rev=1.1&view=markup |
45 | plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/refmac/refmac-5.6.0102.ebuild?rev=1.1&content-type=text/plain |
46 | |
47 | Index: refmac-5.6.0102.ebuild |
48 | =================================================================== |
49 | # Copyright 1999-2011 Gentoo Foundation |
50 | # Distributed under the terms of the GNU General Public License v2 |
51 | # $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/refmac-5.6.0102.ebuild,v 1.1 2011/01/28 15:39:11 jlec Exp $ |
52 | |
53 | EAPI="2" |
54 | |
55 | inherit base toolchain-funcs versionator |
56 | |
57 | MY_PV="$(get_version_component_range 1-2)_source_v${PV}" |
58 | |
59 | DESCRIPTION="Macromolecular crystallographic refinement program" |
60 | HOMEPAGE="http://www.ysbl.york.ac.uk/~garib/refmac" |
61 | SRC_URI=" |
62 | ${HOMEPAGE}/data/refmac_experimental/${PN}${MY_PV}.tar.gz |
63 | test? ( http://dev.gentooexperimental.org/~jlec/distfiles/test-framework.tar.gz )" |
64 | |
65 | SLOT="0" |
66 | LICENSE="ccp4" |
67 | KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux" |
68 | IUSE="test" |
69 | |
70 | RDEPEND=" |
71 | >=sci-libs/ccp4-libs-6.1.3-r7 |
72 | sci-libs/mmdb |
73 | >sci-libs/monomer-db-1 |
74 | virtual/blas |
75 | virtual/lapack" |
76 | DEPEND="${RDEPEND}" |
77 | |
78 | S="${WORKDIR}" |
79 | |
80 | PATCHES=( |
81 | "${FILESDIR}"/${PV}-allow-dynamic-linking.patch |
82 | ) |
83 | |
84 | src_prepare() { |
85 | base_src_prepare |
86 | use test && epatch "${FILESDIR}"/5.5-test.log.patch |
87 | } |
88 | |
89 | src_compile() { |
90 | emake \ |
91 | FC=$(tc-getFC) \ |
92 | CC=$(tc-getCC) \ |
93 | CXX=$(tc-getCXX) \ |
94 | COPTIM="${CFLAGS}" \ |
95 | FOPTIM="${FFLAGS:- -O2}" \ |
96 | VERSION="" \ |
97 | XFFLAGS="-fno-second-underscore" \ |
98 | LLIBCCP="-lccp4f -lccp4c -lccif -lmmdb -lstdc++" \ |
99 | LLIBLAPACK="$(pkg-config --libs lapack blas)" \ |
100 | || die |
101 | } |
102 | |
103 | src_test() { |
104 | einfo "Starting tests ..." |
105 | source "${EPREFIX}/etc/profile.d/40ccp4.setup.sh" |
106 | export PATH="${WORKDIR}/test-framework/scripts:${S}:${PATH}" |
107 | export CCP4_TEST="${WORKDIR}"/test-framework |
108 | export CCP4_SCR="${T}" |
109 | ln -sf refmac "${S}"/refmac5 |
110 | sed '/^ANISOU/d' -i ${CCP4_TEST}/data/pdb/1vr7.pdb |
111 | ccp4-run-thorough-tests -v test_refmac5 || die |
112 | } |
113 | |
114 | src_install() { |
115 | for i in refmac libcheck FreeTwin header2matr; do |
116 | exeinto /usr/libexec/ccp4/bin/ |
117 | doexe ${i} || die |
118 | dosym ../libexec/ccp4/bin/${i} /usr/bin/${i} |
119 | done |
120 | dosym refmac /usr/bin/refmac5 || die |
121 | } |