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commit: 29d62487d6b5776402688fee78b2dbb47cdf3e5c |
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Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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AuthorDate: Mon Aug 1 12:43:59 2016 +0000 |
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Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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CommitDate: Mon Aug 1 12:43:59 2016 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=29d62487 |
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|
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sci-biology/SnpEff: re-order dependencies, back to EAPI=5 |
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|
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Package-Manager: portage-2.3.0 |
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|
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sci-biology/SnpEff/SnpEff-4.2.ebuild | 11 ++++++----- |
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1 file changed, 6 insertions(+), 5 deletions(-) |
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|
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diff --git a/sci-biology/SnpEff/SnpEff-4.2.ebuild b/sci-biology/SnpEff/SnpEff-4.2.ebuild |
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index 9272b63..7cdd51c 100644 |
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--- a/sci-biology/SnpEff/SnpEff-4.2.ebuild |
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+++ b/sci-biology/SnpEff/SnpEff-4.2.ebuild |
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@@ -2,7 +2,7 @@ |
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# Distributed under the terms of the GNU General Public License v2 |
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# $Id$ |
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|
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-EAPI=6 |
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+EAPI=5 |
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|
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inherit java-pkg-2 java-ant-2 |
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|
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@@ -18,12 +18,13 @@ KEYWORDS="~amd64" |
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IUSE="" |
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|
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# https://github.com/pcingola/SnpEff/blob/master/README_release.txt |
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-DEPEND=" |
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+RDEPEND=" |
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>=virtual/jre-1.7:* |
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dev-java/maven-bin:* |
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dev-java/antlr:*" |
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-RDEPEND="${DEPEND} |
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- >=virtual/jdk-1.7:*" |
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+DEPEND="${RDEPEND} |
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+ >=virtual/jdk-1.7:* |
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+ dev-java/ant-core" |
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|
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S="${WORKDIR}" |
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|
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@@ -36,7 +37,7 @@ src_install(){ |
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mkdir -p "${D}"/usr/share || die |
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# but portage does not install the .* files and subdirs, grr! |
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unzip \ |
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- "${DISTDIR}"/snpEff_v4_1e_core.zip -d "${D}"/usr/share \ |
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+ "${DISTDIR}"/snpEff_v4_2_core.zip -d "${D}"/usr/share \ |
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|| die "failed to unzip ${DISTDIR}/snpEff_v4_2_core.zip" |
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sed \ |
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-e 's#$HOME/tools/picard/#/usr/share/picard/lib/#' \ |
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