[gentoo-commits] proj/sci:master commit in: sci-biology/pybedtools/

[Martin Mokrejs]

commit:     ae5eb7ca6ede7e8579ade25afb8eb005c62ee35a
Author:     Martin Mokrejs <mmokrejs <AT> gmail <DOT> com>
AuthorDate: Wed May  6 17:44:42 2020 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Wed May  6 17:44:49 2020 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=ae5eb7ca

sci-biology/pybedtools: update homepage, explicitly run cythonize

Package-Manager: Portage-2.3.95, Repoman-2.3.22
Signed-off-by: Martin Mokrejs <mmokrejs <AT> gmail.com>

 sci-biology/pybedtools/pybedtools-0.8.0.ebuild | 13 ++++++++++---
 1 file changed, 10 insertions(+), 3 deletions(-)

diff --git a/sci-biology/pybedtools/pybedtools-0.8.0.ebuild b/sci-biology/pybedtools/pybedtools-0.8.0.ebuild
index d817a594f..cd444a09e 100644
--- a/sci-biology/pybedtools/pybedtools-0.8.0.ebuild
+++ b/sci-biology/pybedtools/pybedtools-0.8.0.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2019 Gentoo Authors
+# Copyright 1999-2020 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=7
@@ -8,7 +8,7 @@ PYTHON_COMPAT=( python2_7 python3_{5,6,7,8} )
 inherit distutils-r1
 
 DESCRIPTION="Use BED and GFF files from python using BEDtools"
-HOMEPAGE="http://pythonhosted.org/pybedtools/"
+HOMEPAGE="https://daler.github.io/pybedtools"
 SRC_URI="https://github.com/daler/pybedtools/archive/v${PV}.tar.gz -> ${P}.tar.gz"
 
 LICENSE="MIT"
@@ -16,6 +16,13 @@ SLOT="0"
 KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
 IUSE=""
 
-RDEPEND="sci-biology/bedtools"
+RDEPEND="
+	sci-biology/bedtools
+	sci-biology/pysam"
 DEPEND="${RDEPEND}
 	dev-python/cython[${PYTHON_USEDEP}]"
+
+src_compile(){
+	python setup.py cythonize
+	default
+}