Gentoo Archives: gentoo-commits

From: "Justin Lecher (jlec)" <jlec@g.o>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] gentoo-x86 commit in sci-biology/amos: amos-3.1.0-r1.ebuild ChangeLog
Date: Sun, 29 Dec 2013 00:24:21
Message-Id: 20131229002416.D13142004C@flycatcher.gentoo.org
1 jlec 13/12/29 00:24:16
2
3 Modified: ChangeLog
4 Added: amos-3.1.0-r1.ebuild
5 Log:
6 sci-biology/amos: Fix python support
7
8 (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
9
10 Revision Changes Path
11 1.19 sci-biology/amos/ChangeLog
12
13 file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/amos/ChangeLog?rev=1.19&view=markup
14 plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/amos/ChangeLog?rev=1.19&content-type=text/plain
15 diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/amos/ChangeLog?r1=1.18&r2=1.19
16
17 Index: ChangeLog
18 ===================================================================
19 RCS file: /var/cvsroot/gentoo-x86/sci-biology/amos/ChangeLog,v
20 retrieving revision 1.18
21 retrieving revision 1.19
22 diff -u -r1.18 -r1.19
23 --- ChangeLog 19 Mar 2013 07:41:20 -0000 1.18
24 +++ ChangeLog 29 Dec 2013 00:24:16 -0000 1.19
25 @@ -1,6 +1,12 @@
26 # ChangeLog for sci-biology/amos
27 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
28 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/amos/ChangeLog,v 1.18 2013/03/19 07:41:20 jlec Exp $
29 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/amos/ChangeLog,v 1.19 2013/12/29 00:24:16 jlec Exp $
30 +
31 +*amos-3.1.0-r1 (29 Dec 2013)
32 +
33 + 29 Dec 2013; Justin Lecher <jlec@g.o> +amos-3.1.0-r1.ebuild,
34 + +files/amos-3.1.0-goBambus2.py-indent-and-cleanup.patch:
35 + Fix python support
36
37 19 Mar 2013; Justin Lecher <jlec@g.o> amos-3.1.0.ebuild, metadata.xml:
38 Change USE name from qt to qt4, #462218
39
40
41
42 1.1 sci-biology/amos/amos-3.1.0-r1.ebuild
43
44 file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/amos/amos-3.1.0-r1.ebuild?rev=1.1&view=markup
45 plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/amos/amos-3.1.0-r1.ebuild?rev=1.1&content-type=text/plain
46
47 Index: amos-3.1.0-r1.ebuild
48 ===================================================================
49 # Copyright 1999-2013 Gentoo Foundation
50 # Distributed under the terms of the GNU General Public License v2
51 # $Header: /var/cvsroot/gentoo-x86/sci-biology/amos/amos-3.1.0-r1.ebuild,v 1.1 2013/12/29 00:24:16 jlec Exp $
52
53 EAPI=5
54
55 PYTHON_COMPAT=( python{2_6,2_7} )
56
57 inherit eutils python-r1
58
59 DESCRIPTION="A Modular, Open-Source whole genome assembler"
60 HOMEPAGE="http://amos.sourceforge.net/"
61 SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz"
62
63 LICENSE="Artistic"
64 SLOT="0"
65 KEYWORDS="~amd64 ~x86"
66 IUSE="qt4"
67
68 DEPEND="qt4? ( dev-qt/qtcore:4 )"
69 RDEPEND="${DEPEND}
70 dev-perl/DBI
71 dev-perl/Statistics-Descriptive
72 sci-biology/mummer"
73
74 MAKEOPTS+=" -j1"
75
76 src_prepare() {
77 epatch \
78 "${FILESDIR}"/${P}-gcc-4.7.patch \
79 "${FILESDIR}"/${P}-goBambus2.py-indent-and-cleanup.patch
80 }
81
82 src_install() {
83 default
84 python_replicate_script "${ED}"/usr/bin/goBambus2
85 }