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jlec 11/08/29 14:05:37 |
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|
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Modified: metadata.xml ChangeLog |
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Added: pdb-tools-0.1.4-r3.ebuild |
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Removed: pdb-tools-0.1.4-r2.ebuild |
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Log: |
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Fix doubled entries in wrapper scripts |
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|
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(Portage version: 2.2.0_alpha51/cvs/Linux x86_64) |
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|
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Revision Changes Path |
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1.2 sci-chemistry/pdb-tools/metadata.xml |
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|
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pdb-tools/metadata.xml?rev=1.2&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pdb-tools/metadata.xml?rev=1.2&content-type=text/plain |
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diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pdb-tools/metadata.xml?r1=1.1&r2=1.2 |
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|
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Index: metadata.xml |
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=================================================================== |
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RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-tools/metadata.xml,v |
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retrieving revision 1.1 |
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retrieving revision 1.2 |
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diff -u -r1.1 -r1.2 |
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--- metadata.xml 28 Oct 2010 15:48:14 -0000 1.1 |
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+++ metadata.xml 29 Aug 2011 14:05:36 -0000 1.2 |
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@@ -1,8 +1,8 @@ |
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<?xml version="1.0" encoding="UTF-8"?> |
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<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
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<pkgmetadata> |
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-<herd>sci-chemistry</herd> |
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-<maintainer> |
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- <email>jlec@g.o</email> |
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-</maintainer> |
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+ <herd>sci-chemistry</herd> |
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+ <maintainer> |
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+ <email>jlec@g.o</email> |
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+ </maintainer> |
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</pkgmetadata> |
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|
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1.7 sci-chemistry/pdb-tools/ChangeLog |
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pdb-tools/ChangeLog?rev=1.7&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pdb-tools/ChangeLog?rev=1.7&content-type=text/plain |
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diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pdb-tools/ChangeLog?r1=1.6&r2=1.7 |
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|
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Index: ChangeLog |
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=================================================================== |
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RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-tools/ChangeLog,v |
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retrieving revision 1.6 |
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retrieving revision 1.7 |
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diff -u -r1.6 -r1.7 |
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--- ChangeLog 21 Jun 2011 16:00:15 -0000 1.6 |
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+++ ChangeLog 29 Aug 2011 14:05:36 -0000 1.7 |
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@@ -1,6 +1,12 @@ |
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# ChangeLog for sci-chemistry/pdb-tools |
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# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 |
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-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-tools/ChangeLog,v 1.6 2011/06/21 16:00:15 jlec Exp $ |
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+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-tools/ChangeLog,v 1.7 2011/08/29 14:05:36 jlec Exp $ |
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+ |
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+*pdb-tools-0.1.4-r3 (29 Aug 2011) |
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+ |
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+ 29 Aug 2011; Justin Lecher <jlec@g.o> -pdb-tools-0.1.4-r2.ebuild, |
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+ +pdb-tools-0.1.4-r3.ebuild, metadata.xml: |
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+ Fix doubled entries in wrapper scripts |
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|
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21 Jun 2011; Justin Lecher <jlec@g.o> pdb-tools-0.1.4-r2.ebuild: |
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Add dependency on virtual/fortran |
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|
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|
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1.1 sci-chemistry/pdb-tools/pdb-tools-0.1.4-r3.ebuild |
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|
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pdb-tools/pdb-tools-0.1.4-r3.ebuild?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pdb-tools/pdb-tools-0.1.4-r3.ebuild?rev=1.1&content-type=text/plain |
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|
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Index: pdb-tools-0.1.4-r3.ebuild |
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=================================================================== |
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# Copyright 1999-2011 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-tools/pdb-tools-0.1.4-r3.ebuild,v 1.1 2011/08/29 14:05:36 jlec Exp $ |
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|
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EAPI=3 |
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|
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PYTHON_DEPEND="2" |
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SUPPORT_PYTHON_ABIS="1" |
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RESTRICT_PYTHON_ABIS="3.*" |
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|
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inherit fortran-2 python toolchain-funcs |
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|
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DESCRIPTION="Tools for manipulating and doing calculations on wwPDB macromolecule structure files" |
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HOMEPAGE="http://code.google.com/p/pdb-tools/" |
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SRC_URI="http://${PN}.googlecode.com/files/${PN}_${PV}.tar.gz" |
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|
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SLOT="0" |
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LICENSE="GPL-3" |
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KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" |
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IUSE="" |
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|
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RDEPEND=" |
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sci-chemistry/dssp |
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virtual/fortran" |
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DEPEND="" |
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|
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S="${WORKDIR}"/${PN}_${PV} |
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|
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src_prepare() { |
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sed "s:script_dir,\"pdb_data\":\"${EPREFIX}/usr/share/${PN}\",\"pdb_data\":g" -i pdb_sasa.py || die |
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sed "/satk_path =/s:^.*$:satk_path = \"${EPREFIX}/usr/bin\":g" -i pdb_satk.py || die |
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} |
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|
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src_compile() { |
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mkdir bin |
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cd satk |
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for i in *.f; do |
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einfo "$(tc-getFC) ${FFLAGS} ${LDFLAGS} ${i} -o ${i/.f}" |
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$(tc-getFC) ${FFLAGS} -c ${i} -o ${i/.f/.o} || die |
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$(tc-getFC) ${LDFLAGS} -o ../bin/${i/.f} ${i/.f/.o} || die |
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sed "s:${i/.f}.out:${i/.f}:g" -i ../pdb_satk.py || die |
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done |
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} |
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|
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src_install() { |
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insinto /usr/share/${PN} |
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doins -r pdb_data/peptides || die |
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rm -rf pdb_data/peptides || die |
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|
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installation() { |
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insinto $(python_get_sitedir) |
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doins -r helper pdb_data || die |
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|
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insinto $(python_get_sitedir)/${PN} |
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doins *.py || die |
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|
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for i in pdb_*.py; do |
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cat > ${i/.py} <<- EOF |
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#!${EPREFIX}/bin/bash |
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$(PYTHON) -O "${EPREFIX}$(python_get_sitedir)/${PN}/${i}" \$@ |
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EOF |
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dobin ${i/.py} |
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done |
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} |
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|
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python_execute_function installation |
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|
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dobin bin/* || die |
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dodoc README || die |
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} |
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|
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pkg_postinst() { |
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python_mod_optimize ${PN} helper pdb_data |
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} |
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|
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pkg_postrm() { |
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python_mod_cleanup ${PN} helper pdb_data |
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} |
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