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commit: c7f45dbb5043e60a8b4c0a091fcb0465ffbbef50 |
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Author: David Seifert <soap <AT> gentoo <DOT> org> |
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AuthorDate: Wed Mar 8 18:46:35 2017 +0000 |
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Commit: David Seifert <soap <AT> gentoo <DOT> org> |
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CommitDate: Wed Mar 8 18:47:18 2017 +0000 |
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URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c7f45dbb |
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|
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sci-biology/elph: Modernise to EAPI 6 |
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|
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Package-Manager: Portage-2.3.4, Repoman-2.3.2 |
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|
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sci-biology/elph/elph-1.0.1-r1.ebuild | 31 ++++++++++++ |
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.../elph/files/elph-1.0.1-fix-build-system.patch | 55 ++++++++++++++++++++++ |
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2 files changed, 86 insertions(+) |
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|
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diff --git a/sci-biology/elph/elph-1.0.1-r1.ebuild b/sci-biology/elph/elph-1.0.1-r1.ebuild |
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new file mode 100644 |
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index 00000000000..c166dd93e41 |
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--- /dev/null |
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+++ b/sci-biology/elph/elph-1.0.1-r1.ebuild |
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@@ -0,0 +1,31 @@ |
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+# Copyright 1999-2017 Gentoo Foundation |
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+# Distributed under the terms of the GNU General Public License v2 |
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+ |
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+EAPI=6 |
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+ |
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+inherit toolchain-funcs |
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+ |
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+DESCRIPTION="Estimated Locations of Pattern Hits - Motif finder program" |
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+LICENSE="Artistic" |
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+HOMEPAGE="http://cbcb.umd.edu/software/ELPH/" |
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+SRC_URI="ftp://ftp.cbcb.umd.edu/pub/software/elph/ELPH-${PV}.tar.gz" |
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+ |
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+SLOT="0" |
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+IUSE="" |
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+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos" |
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+ |
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+S=${WORKDIR}/${PN^^}/sources |
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+ |
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+PATCHES=( "${FILESDIR}/${PN}-1.0.1-fix-build-system.patch" ) |
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+ |
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+src_configure() { |
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+ tc-export CC CXX |
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+} |
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+ |
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+src_install() { |
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+ dobin elph |
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+ |
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+ cd "${WORKDIR}"/ELPH || die |
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+ dodoc VERSION |
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+ newdoc Readme.ELPH README |
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+} |
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|
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diff --git a/sci-biology/elph/files/elph-1.0.1-fix-build-system.patch b/sci-biology/elph/files/elph-1.0.1-fix-build-system.patch |
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new file mode 100644 |
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index 00000000000..9afbb68666d |
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--- /dev/null |
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+++ b/sci-biology/elph/files/elph-1.0.1-fix-build-system.patch |
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@@ -0,0 +1,55 @@ |
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+Make build system respect user variables |
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+ |
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+--- a/Makefile |
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++++ b/Makefile |
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+@@ -1,42 +1,26 @@ |
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+-CLASSDIR := . |
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+- |
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+-# Directories to search for header files |
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+-SEARCHDIRS := -I- -I${CLASSDIR} |
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+- |
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+- |
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+-SYSTYPE := $(shell uname) |
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+- |
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+-# C compiler |
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+- |
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+-CC := g++ |
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+-CFLAGS = -Wall ${SEARCHDIRS} -fno-exceptions -fno-rtti -D_REENTRANT -g |
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++my_CPPFLAGS = -D_REENTRANT -I. |
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+ |
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+ %.o : %.c |
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+- ${CC} ${CFLAGS} -c $< -o $@ |
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++ $(CC) -Wall $(CFLAGS) $(my_CPPFLAGS) $(CPPFLAGS) -c $< -o $@ |
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+ |
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+ %.o : %.cc |
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+- ${CC} ${CFLAGS} -c $< -o $@ |
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++ $(CXX) -Wall $(CXXFLAGS) $(my_CPPFLAGS) $(CPPFLAGS) -c $< -o $@ |
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+ |
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+ %.o : %.C |
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+- ${CC} ${CFLAGS} -c $< -o $@ |
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++ $(CXX) -Wall $(CXXFLAGS) $(my_CPPFLAGS) $(CPPFLAGS) -c $< -o $@ |
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+ |
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+ %.o : %.cpp |
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+- ${CC} ${CFLAGS} -c $< -o $@ |
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++ $(CXX) -Wall $(CXXFLAGS) $(my_CPPFLAGS) $(CPPFLAGS) -c $< -o $@ |
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+ |
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+ %.o : %.cxx |
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+- ${CC} ${CFLAGS} -c $< -o $@ |
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++ $(CXX) -Wall $(CXXFLAGS) $(my_CPPFLAGS) $(CPPFLAGS) -c $< -o $@ |
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+ |
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+ # C/C++ linker |
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+- |
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+-LINKER := g++ |
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+-LDFLAGS = |
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+-LOADLIBES := |
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+- |
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+ .PHONY : all |
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+ all: elph |
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+ |
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+-elph: ./elph.o ${CLASSDIR}/motif.o ${CLASSDIR}/GBase.o ${CLASSDIR}/GString.o ${CLASSDIR}/GArgs.o |
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+- ${LINKER} ${LDFLAGS} -o $@ ${filter-out %.a %.so, $^} ${LOADLIBES} |
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++elph: elph.o motif.o GBase.o GString.o GArgs.o |
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++ $(CXX) $(LDFLAGS) $(CXXFLAGS) -o $@ $^ |
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+ |
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+ # target for removing all object files |
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+ |
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