[gentoo-commits] gentoo-x86 commit in licenses: psipred - gentoo-commits

From:	"Justin Lecher (jlec)" <jlec@g.o>
To:	gentoo-commits@l.g.o
Subject:	[gentoo-commits] gentoo-x86 commit in licenses: psipred
Date:	Sat, 27 Feb 2010 09:57:28
Message-Id:	`E1NlJQK-0004e3-QH@stork.gentoo.org`

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jlec        10/02/27 09:57:24

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  Added:                psipred

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  Log:

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  psipred license added

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Revision  Changes    Path

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1.1                  licenses/psipred

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file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/licenses/psipred?rev=1.1&view=markup

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plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/licenses/psipred?rev=1.1&content-type=text/plain

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Index: psipred

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===================================================================

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PLEASE READ THE FOLLOWING LICENSE AGREEMENT. BY USING THE PROGRAM YOU ARE

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ACKNOWLEDGING THE FACT THAT YOU AGREE TO THE TERMS OUTLINED IN THIS

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AGREEMENT. USERS WISHING TO USE THE SOFTWARE FOR COMMERCIAL ACTIVITIES

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NOT COVERED BY THIS AGREEMENT SHOULD SEND E-MAIL TO: dtj@×××××××××.uk

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* NOTE RECENT CHANGES TO PARAGRAPH 8 *

 PSIPRED2 - PROTEIN SECONDARY STRUCTURE PREDICTION PROGRAM BY D.T.JONES

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 ----------------------------------------------------------------------

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                          GENERAL LICENSE &

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                          -----------------

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		     CONFIDENTIALITY AGREEMENT

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		     -------------------------

In regard to the protein structure prediction program (PSIPRED2)

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herewith (the Software) the copyright and other intellectual property

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rights to which belong to the Author(s).

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Any user (the User) of the program undertakes to the Copyright holder that he

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or she shall be bound by the following terms and conditions:-

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1. The User will receive the Software and any related documentation in

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confidence and will not use the same except for the purpose of their own 

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research. The Software will be used only by such of the User's officers or

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employees to whom it must reasonably be communicated to enable them to

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undertake their research and who agree to be bound by the same confidence.

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The User shall procure and enforce such agreement from his or her staff for

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the benefit of the Copyright holder.

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2. The publication of research using the Software must include an

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appropriate citation to the method:

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53

Jones, D.T. (1999) Protein secondary structure prediction based on

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position-specific scoring matrices. J. Mol. Biol. 292:195-202.

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3. All forms of the Software will be kept in a reasonably secure place to

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prevent unauthorised access.

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4. Each copy of the Software or, if not practicable then, any package

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associated therewith shall be suitably marked (and such marking maintained) 

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with the following copyright notice: "Copyright 2000 D.T.Jones. All Rights

62

Reserved.".

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5. The Software may be modified, but any changes made shall be communicated

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to the Author(s) and made freely available.

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6. The Software may not be sold as a standalone package, or incorporated into

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a commercial software package without the written permission of the Copyright

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holder. The Software may be used freely for individual academic or commercial

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research. The Software may also be made freely available for training or

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teaching purposes.

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7. The results produced by the Software may not be incorporated into any

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data banks or databases which are subject to the payment of access or

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license fees without the written permission of the Copyright holder.

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8. The Software may be made available to users over a local network or

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wide area network (including the Internet), but only if access is granted

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free of charge to all authorised users. Incorporation of the Software into

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a commercial Web site or other fee paying service is not allowed without

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the written permission of the Copyright holder. If PSIPRED results are

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returned to the user via such a network service, then a suitable

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acknowledgement of the PSIPRED method must be returned somewhere in the

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output text.

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9. The confidentiality obligation in paragraph one shall not apply:

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   (i)  to information and data known to the User at the time of

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	receipt hereunder (as evidenced by its written records);

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  (ii)	to information and data which was at the time of receipt in the 

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	public domain or thereafter becomes so through no wrongful act of

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	the User;

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 (iii)	to information and data which the User receives from a third

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	party not in breach of any obligation of confidentiality owed to

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	the Author(s).

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10. The User understands that the Software is supplied "as is". No warranty

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   as to its fitness or suitability for any purpose whatsoever is made or

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   implied. In no event shall the Author(s) or Copyright holder be held

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   responsible for any direct or indirect damages arising through the use

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   of the Software.

1	jlec 10/02/27 09:57:24
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3	Added: psipred
4	Log:
5	psipred license added
6
7	Revision Changes Path
8	1.1 licenses/psipred
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10	file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/licenses/psipred?rev=1.1&view=markup
11	plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/licenses/psipred?rev=1.1&content-type=text/plain
12
13	Index: psipred
14	===================================================================
15	PLEASE READ THE FOLLOWING LICENSE AGREEMENT. BY USING THE PROGRAM YOU ARE
16	ACKNOWLEDGING THE FACT THAT YOU AGREE TO THE TERMS OUTLINED IN THIS
17	AGREEMENT. USERS WISHING TO USE THE SOFTWARE FOR COMMERCIAL ACTIVITIES
18	NOT COVERED BY THIS AGREEMENT SHOULD SEND E-MAIL TO: dtj@×××××××××.uk
19
20	* NOTE RECENT CHANGES TO PARAGRAPH 8 *
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22
23
24	PSIPRED2 - PROTEIN SECONDARY STRUCTURE PREDICTION PROGRAM BY D.T.JONES
25	----------------------------------------------------------------------
26
27	GENERAL LICENSE &
28	-----------------
29
30	CONFIDENTIALITY AGREEMENT
31	-------------------------
32
33
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35	In regard to the protein structure prediction program (PSIPRED2)
36	herewith (the Software) the copyright and other intellectual property
37	rights to which belong to the Author(s).
38
39	Any user (the User) of the program undertakes to the Copyright holder that he
40	or she shall be bound by the following terms and conditions:-
41
42	1. The User will receive the Software and any related documentation in
43	confidence and will not use the same except for the purpose of their own
44	research. The Software will be used only by such of the User's officers or
45	employees to whom it must reasonably be communicated to enable them to
46	undertake their research and who agree to be bound by the same confidence.
47	The User shall procure and enforce such agreement from his or her staff for
48	the benefit of the Copyright holder.
49
50	2. The publication of research using the Software must include an
51	appropriate citation to the method:
52
53	Jones, D.T. (1999) Protein secondary structure prediction based on
54	position-specific scoring matrices. J. Mol. Biol. 292:195-202.
55
56	3. All forms of the Software will be kept in a reasonably secure place to
57	prevent unauthorised access.
58
59	4. Each copy of the Software or, if not practicable then, any package
60	associated therewith shall be suitably marked (and such marking maintained)
61	with the following copyright notice: "Copyright 2000 D.T.Jones. All Rights
62	Reserved.".
63
64	5. The Software may be modified, but any changes made shall be communicated
65	to the Author(s) and made freely available.
66
67	6. The Software may not be sold as a standalone package, or incorporated into
68	a commercial software package without the written permission of the Copyright
69	holder. The Software may be used freely for individual academic or commercial
70	research. The Software may also be made freely available for training or
71	teaching purposes.
72
73	7. The results produced by the Software may not be incorporated into any
74	data banks or databases which are subject to the payment of access or
75	license fees without the written permission of the Copyright holder.
76
77	8. The Software may be made available to users over a local network or
78	wide area network (including the Internet), but only if access is granted
79	free of charge to all authorised users. Incorporation of the Software into
80	a commercial Web site or other fee paying service is not allowed without
81	the written permission of the Copyright holder. If PSIPRED results are
82	returned to the user via such a network service, then a suitable
83	acknowledgement of the PSIPRED method must be returned somewhere in the
84	output text.
85
86	9. The confidentiality obligation in paragraph one shall not apply:
87
88	(i) to information and data known to the User at the time of
89	receipt hereunder (as evidenced by its written records);
90
91	(ii) to information and data which was at the time of receipt in the
92	public domain or thereafter becomes so through no wrongful act of
93	the User;
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95	(iii) to information and data which the User receives from a third
96	party not in breach of any obligation of confidentiality owed to
97	the Author(s).
98
99	10. The User understands that the Software is supplied "as is". No warranty
100	as to its fitness or suitability for any purpose whatsoever is made or
101	implied. In no event shall the Author(s) or Copyright holder be held
102	responsible for any direct or indirect damages arising through the use
103	of the Software.

Gentoo Archives: gentoo-commits