[gentoo-commits] gentoo-x86 commit in sci-biology/lagan: metadata.xml ChangeLog lagan-2.0.ebuild

[Andrey Kislyuk (weaver)]

weaver      09/02/27 00:23:49

  Added:                metadata.xml ChangeLog lagan-2.0.ebuild
  Log:
  Import from Science overlay
  (Portage version: 2.2_rc20/cvs/Linux 2.6.26-gentoo-r4 x86_64)

Revision  Changes    Path
1.1                  sci-biology/lagan/metadata.xml

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/lagan/metadata.xml?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/lagan/metadata.xml?rev=1.1&content-type=text/plain

Index: metadata.xml
===================================================================
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
	<maintainer>
		<email>weaver@g.o</email>
		<name>Andrey Kislyuk</name>
	</maintainer>
	<herd>sci-biology</herd>
</pkgmetadata>



1.1                  sci-biology/lagan/ChangeLog

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/lagan/ChangeLog?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/lagan/ChangeLog?rev=1.1&content-type=text/plain

Index: ChangeLog
===================================================================
# ChangeLog for sci-biology/lagan
# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/lagan/ChangeLog,v 1.1 2009/02/27 00:23:49 weaver Exp $

*lagan-2.0 (26 Feb 2009)

  26 Feb 2009; Andrey Kislyuk <weaver@g.o>
  +files/lagan-2.0-gcc4.3.patch, +metadata.xml, +lagan-2.0.ebuild:
  Import from Science overlay

  04 Feb 2009; weaver <weaver@g.o> ChangeLog:
  New package sci-biology/lagan, bug 257667




1.1                  sci-biology/lagan/lagan-2.0.ebuild

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/lagan/lagan-2.0.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/lagan/lagan-2.0.ebuild?rev=1.1&content-type=text/plain

Index: lagan-2.0.ebuild
===================================================================
# Copyright 1999-2009 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/lagan/lagan-2.0.ebuild,v 1.1 2009/02/27 00:23:49 weaver Exp $

inherit eutils

MY_PV="20"

DESCRIPTION="LAGAN, Multi-LAGAN, Shuffle-LAGAN, Supermap: Whole-genome multiple alignment of genomic DNA"
HOMEPAGE="http://lagan.stanford.edu/lagan_web/index.shtml"
SRC_URI="http://lagan.stanford.edu/lagan_web/lagan${MY_PV}.tar.gz"

LICENSE="GPL-2"
SLOT="0"
IUSE=""
KEYWORDS="~amd64 ~x86"

DEPEND=""
RDEPEND=""

S="${WORKDIR}/lagan${MY_PV}"

src_unpack() {
	unpack ${A}
	sed -i "/use Getopt::Long;/ i use lib \"/usr/share/${PN}/lib\";" "${S}/supermap.pl" || die
	epatch "${FILESDIR}"/${P}-*.patch
}

src_install() {
	dobin lagan.pl slagan.pl mlagan
	rm lagan.pl slagan.pl utils/Utils.pm
	dodir /usr/share/${PN}/lib
	insinto /usr/share/${PN}/lib
	doins Utils.pm
	exeinto /usr/share/${PN}/utils
	doexe utils/*
	exeinto /usr/share/${PN}
	doexe *.pl anchors chaos glocal order prolagan
	insinto /usr/share/${PN}
	doins *.txt
	dosym /usr/share/${PN}/supermap.pl /usr/bin/supermap
	dosym /usr/bin/lagan.pl /usr/bin/lagan
	dosym /usr/bin/slagan.pl /usr/bin/slagan
	echo "LAGAN_DIR=\"/usr/share/${PN}\"" > ${S}/99${PN}
	doenvd "${S}/99${PN}"
	dodoc Readmes/README.*
}