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commit: 6608559d020df9dc6c0e7364bc7c058a1c2ab1fd |
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Author: Alexey Shvetsov <alexxy <AT> gentoo <DOT> org> |
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AuthorDate: Tue Feb 26 14:15:06 2019 +0000 |
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Commit: Alexey Shvetsov <alexxy <AT> gentoo <DOT> org> |
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CommitDate: Tue Feb 26 14:15:06 2019 +0000 |
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URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=6608559d |
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|
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sci-chemistry/pymol: Version bump |
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|
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Package-Manager: Portage-2.3.62, Repoman-2.3.12 |
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Signed-off-by: Alexey Shvetsov <alexxy <AT> gentoo.org> |
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|
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sci-chemistry/pymol/Manifest | 1 + |
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sci-chemistry/pymol/pymol-2.3.0.ebuild | 115 +++++++++++++++++++++++++++++++++ |
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2 files changed, 116 insertions(+) |
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|
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diff --git a/sci-chemistry/pymol/Manifest b/sci-chemistry/pymol/Manifest |
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index d308fc6a065..4e293b43050 100644 |
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--- a/sci-chemistry/pymol/Manifest |
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+++ b/sci-chemistry/pymol/Manifest |
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@@ -1,3 +1,4 @@ |
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DIST pymol-1.8.4.0.png.xz 19528 BLAKE2B f3d23d4cedca3d8bb96b20646a548da4be570697e3346a11b01c5c3599b536ba4697be08472dfa8a4f6533167defc1a37a1de332931a73857319cb28fd42cd2b SHA512 40bb0d3f226476f6e047b5361956aad955232a97641474765eaa5204f0539aee3810e0266213618a45364f9f31f6eb18380b17e0c79f64065f7b62a9016caa7c |
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DIST pymol-2.2.0.tar.gz 10514753 BLAKE2B 54bf7c639ec1af0c318438f6dcbe5878aded5cc360dee3a5f1dee4b6eea588f4242865ae8adf1e044628ad5f71aa8f6d58d0cc71baf7c1f20eed3045ed3a1cb1 SHA512 56776586276208d42cc4bd4c3cb7d6b9a08e7239186b8f398c75cb57f85e05ebf51aaa8cdec5672e56beeda26f1cd9d14c6de7fba1a741f9c8ec22c1292b9c63 |
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+DIST pymol-2.3.0.tar.gz 10448674 BLAKE2B 0d508587d880ce7f2e8a0481bf664e6bfe6eb1d68b0f48b9266cde756824bd8c0144d7243e958bbc5e571d60fca9dafff125d81a8a3d32107e78ad2ff8dffc05 SHA512 e1dcea1c97bcd9045d3543e92902f240e6affbf61a38e8d2a0be04309e3dbabfe1a869847d1423b3151008978d4c305bbf3ce994fc9d453c0063ce020100c133 |
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DIST pymol-v1.8.4.0.tar.bz2 8717344 BLAKE2B a4cfb95eb40a3cd3da5b8cfd4acac7255997f9a3e49ef7e7e1d4c13f36e4aace462a054c326bbaadbc99f22286be878a6d5c518149760b5c939ce9362d4b8cc3 SHA512 73a810adfc31adaf0f3fa25512084882c87b0782c8af716ac0203a5b5b7f0b9fedfbce3d129bffef7b52044e92b0542e683966b2acf961c4dac17fbba72dd7fe |
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|
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diff --git a/sci-chemistry/pymol/pymol-2.3.0.ebuild b/sci-chemistry/pymol/pymol-2.3.0.ebuild |
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new file mode 100644 |
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index 00000000000..0f197578023 |
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--- /dev/null |
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+++ b/sci-chemistry/pymol/pymol-2.3.0.ebuild |
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@@ -0,0 +1,115 @@ |
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+# Copyright 1999-2019 Gentoo Authors |
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+# Distributed under the terms of the GNU General Public License v2 |
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+ |
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+EAPI=7 |
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+ |
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+PYTHON_COMPAT=( python2_7 ) |
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+PYTHON_REQ_USE="tk" |
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+ |
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+inherit distutils-r1 eutils xdg-utils flag-o-matic |
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+ |
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+DESCRIPTION="A Python-extensible molecular graphics system" |
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+HOMEPAGE="http://www.pymol.org/" |
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+SRC_URI=" |
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+ https://dev.gentoo.org/~jlec/distfiles/${PN}-1.8.4.0.png.xz |
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+ https://github.com/schrodinger/pymol-open-source/archive/v${PV}.tar.gz -> ${P}.tar.gz |
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+ " |
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+# git archive -v --prefix=${P}/ master -o ${P}.tar.xz |
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+RESTRICT="mirror" |
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+LICENSE="PSF-2.2" |
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+SLOT="0" |
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+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos" |
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+IUSE="web" |
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+ |
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+DEPEND=" |
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+ dev-libs/msgpack[cxx] |
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+ dev-libs/mmtf-cpp |
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+ dev-python/numpy[${PYTHON_USEDEP}] |
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+ dev-python/pyopengl[${PYTHON_USEDEP}] |
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+ media-libs/freeglut |
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+ media-libs/freetype:2 |
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+ media-libs/glew:0= |
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+ media-libs/glm |
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+ media-libs/libpng:0= |
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+ media-video/mpeg-tools |
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+ sys-libs/zlib |
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+ virtual/python-pmw[${PYTHON_USEDEP}] |
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+ !sci-chemistry/pymol-apbs-plugin[${PYTHON_USEDEP}] |
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+ web? ( !dev-python/webpy[${PYTHON_USEDEP}] )" |
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+RDEPEND="${DEPEND}" |
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+ |
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+S="${WORKDIR}"/${PN}-open-source-${PV} |
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+ |
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+python_prepare_all() { |
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+ sed \ |
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+ -e "s:\"/usr:\"${EPREFIX}/usr:g" \ |
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+ -e "/ext_comp_args.*+=/s:\[.*\]$:\[\]:g" \ |
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+ -e "/import/s:argparse:argparseX:g" \ |
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+ -i setup.py || die |
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+ |
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+ sed \ |
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+ -e "s:/opt/local:${EPREFIX}/usr:g" \ |
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+ -e '/ext_comp_args/s:\[.*\]:[]:g' \ |
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+ -i setup.py || die |
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+ sed \ |
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+ -e "s:\['msgpackc'\]:\['msgpack'\]:g" \ |
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+ -i setup.py || die |
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+ |
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+ append-cxxflags -std=c++0x |
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+ |
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+ distutils-r1_python_prepare_all |
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+} |
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+ |
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+python_install() { |
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+ distutils-r1_python_install \ |
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+ --pymol-path="${EPREFIX}/usr/share/pymol" |
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+ |
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+ sed \ |
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+ -e '1d' \ |
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+ -e "/APBS_BINARY_LOCATION/s:None:\"${EPREFIX}/usr/bin/apbs\":g" \ |
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+ -e "/APBS_PSIZE_LOCATION/s:None:\"$(python_get_sitedir)/pdb2pqr/src/\":g" \ |
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+ -e "/APBS_PDB2PQR_LOCATION/s:None:\"$(python_get_sitedir)/pdb2pqr/\":g" \ |
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+ -i "${D}/$(python_get_sitedir)"/pmg_tk/startup/apbs_tools.py || die |
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+} |
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+ |
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+python_install_all() { |
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+ distutils-r1_python_install_all |
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+ |
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+ sed \ |
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+ -e '1i#!/usr/bin/env python' \ |
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+ "${D}/$(python_get_sitedir)"/pymol/__init__.py > "${T}"/${PN} || die |
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+ |
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+ python_foreach_impl python_doscript "${T}"/${PN} |
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+ |
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+ # These environment variables should not go in the wrapper script, or else |
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+ # it will be impossible to use the PyMOL libraries from Python. |
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+ cat >> "${T}"/20pymol <<- EOF |
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+ PYMOL_PATH="${EPREFIX}/usr/share/pymol" |
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+ PYMOL_DATA="${EPREFIX}/usr/share/pymol/data" |
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+ PYMOL_SCRIPTS="${EPREFIX}/usr/share/pymol/scripts" |
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+ EOF |
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+ |
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+ doenvd "${T}"/20pymol |
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+ |
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+ newicon "${WORKDIR}"/${PN}-1.8.4.0.png ${PN}.png |
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+ make_desktop_entry ${PN} PyMol ${PN} \ |
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+ "Graphics;Education;Science;Chemistry;" \ |
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+ "MimeType=chemical/x-pdb;chemical/x-mdl-molfile;chemical/x-mol2;chemical/seq-aa-fasta;chemical/seq-na-fasta;chemical/x-xyz;chemical/x-mdl-sdf;" |
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+ |
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+ if ! use web; then |
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+ rm -rf "${D}/$(python_get_sitedir)/web" || die |
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+ fi |
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+ |
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+ rm -f "${ED}"/usr/share/${PN}/LICENSE || die |
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+} |
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+ |
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+pkg_postinst() { |
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+ xdg_desktop_database_update |
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+ xdg_mimeinfo_database_update |
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+ optfeature "Electrostatic calculations" sci-chemistry/apbs sci-chemistry/pdb2pqr |
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+} |
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+ |
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+pkg_postrm() { |
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+ xdg_desktop_database_update |
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+ xdg_mimeinfo_database_update |
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+} |