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commit: 84e0f638f095e67e26939f1f33c16c115745edca |
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Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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AuthorDate: Wed Jul 27 08:56:40 2016 +0000 |
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Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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CommitDate: Wed Jul 27 08:56:40 2016 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=84e0f638 |
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sci-biology/SnpEff: version bump |
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Package-Manager: portage-2.2.28 |
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sci-biology/SnpEff/{SnpEff-4.1e.ebuild => SnpEff-4.2.ebuild} | 4 ++-- |
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1 file changed, 2 insertions(+), 2 deletions(-) |
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diff --git a/sci-biology/SnpEff/SnpEff-4.1e.ebuild b/sci-biology/SnpEff/SnpEff-4.2.ebuild |
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similarity index 92% |
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rename from sci-biology/SnpEff/SnpEff-4.1e.ebuild |
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rename to sci-biology/SnpEff/SnpEff-4.2.ebuild |
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index 7ba4236..ecdc205 100644 |
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--- a/sci-biology/SnpEff/SnpEff-4.1e.ebuild |
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+++ b/sci-biology/SnpEff/SnpEff-4.2.ebuild |
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@@ -9,7 +9,7 @@ inherit java-pkg-2 java-ant-2 |
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DESCRIPTION="Annotate SNP changes and predict their effect" |
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HOMEPAGE="http://snpeff.sourceforge.net" |
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SRC_URI=" |
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- http://sourceforge.net/projects/snpeff/files/snpEff_v4_1e_core.zip |
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+ http://sourceforge.net/projects/snpeff/files/snpEff_v4_2_core.zip |
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http://snpeff.sourceforge.net/SnpSift.html -> ${P}.html" |
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LICENSE="LGPL-3" |
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@@ -37,7 +37,7 @@ src_install(){ |
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# but portage does not install the .* files and subdirs, grr! |
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unzip \ |
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"${DISTDIR}"/snpEff_v4_1e_core.zip -d "${D}"/usr/share \ |
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- || die "failed to unzip ${DISTDIR}/snpEff_v4_1e_core.zip" |
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+ || die "failed to unzip ${DISTDIR}/snpEff_v4_2_core.zip" |
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sed \ |
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-e 's#$HOME/tools/picard/#/usr/share/picard/lib/#' \ |
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-i "${ED}"/usr/share/snpEff/scripts/annotate_demo_GATK.sh || die |
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