[gentoo-commits] repo/gentoo:master commit in: sci-biology/trnascan-se/

[Sam James]

commit:     24345bb7834073b0027c28b890a36ed5ffd35a12
Author:     Sam James <sam <AT> gentoo <DOT> org>
AuthorDate: Sat Jul  2 23:38:32 2022 +0000
Commit:     Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Sat Jul  2 23:38:32 2022 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=24345bb7

sci-biology/trnascan-se: update EAPI 6 -> 8

Closes: https://bugs.gentoo.org/710970
Signed-off-by: Sam James <sam <AT> gentoo.org>

 sci-biology/trnascan-se/trnascan-se-1.31-r1.ebuild | 53 ++++++++++++++++++++++
 1 file changed, 53 insertions(+)

diff --git a/sci-biology/trnascan-se/trnascan-se-1.31-r1.ebuild b/sci-biology/trnascan-se/trnascan-se-1.31-r1.ebuild
new file mode 100644
index 000000000000..cbbcb5f0e11e
--- /dev/null
+++ b/sci-biology/trnascan-se/trnascan-se-1.31-r1.ebuild
@@ -0,0 +1,53 @@
+# Copyright 1999-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+inherit perl-functions toolchain-funcs
+
+DESCRIPTION="tRNA detection in large-scale genome sequences"
+HOMEPAGE="http://lowelab.ucsc.edu/tRNAscan-SE/"
+SRC_URI="http://lowelab.ucsc.edu/software/tRNAscan-SE.tar.gz -> ${P}.tar.gz"
+S="${WORKDIR}"/tRNAscan-SE-1.3.1/
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+
+PATCHES=(
+	"${FILESDIR}"/${P}-ldflags.patch
+)
+
+src_prepare() {
+	default
+
+	sed \
+		-e "s:BINDIR  = \$(HOME)/bin:BINDIR = ${EPREFIX}/usr/bin:" \
+		-e "s:LIBDIR  = \$(HOME)/lib/tRNAscan-SE:LIBDIR = ${EPRFIX}/usr/share/${PN}:" \
+		-e "s:MANDIR  = \$(HOME)/man:MANDIR = ${EPREFIX}/usr/share/man:" \
+		-e "s:CC = gcc:CC = $(tc-getCC):" \
+		-e "s;CFLAGS = -O;CFLAGS = ${CFLAGS};" \
+		-i Makefile || die
+
+	perl_set_version
+}
+
+src_test() {
+	emake PATH="${S}:${PATH}" testrun
+}
+
+src_install() {
+	dobin covels-SE coves-SE eufindtRNA tRNAscan-SE trnascan-1.4
+
+	newman tRNAscan-SE.man tRNAscan-SE.man.1
+
+	dodoc MANUAL README Release.history
+
+	insinto /usr/share/${PN}/
+	doins *.cm gcode.* Dsignal TPCsignal
+
+	dodoc Manual.ps
+
+	insinto ${VENDOR_LIB}
+	doins -r tRNAscanSE
+}