Gentoo Archives: gentoo-commits

From: Martin Mokrejs <mmokrejs@×××××××××××××××.cz>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/abacas/
Date: Tue, 31 Mar 2015 16:19:54
Message-Id: 1427818748.3b0ca41e88d8131cf6aa944ff3da23ff743bd3a0.mmokrejs@gentoo
1 commit: 3b0ca41e88d8131cf6aa944ff3da23ff743bd3a0
2 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
3 AuthorDate: Tue Mar 31 16:19:08 2015 +0000
4 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
5 CommitDate: Tue Mar 31 16:19:08 2015 +0000
6 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=3b0ca41e
7
8 sci-biology/abacas: new package
9
10 Package-Manager: portage-2.2.18
11
12 sci-biology/abacas/ChangeLog | 9 +++++++++
13 sci-biology/abacas/abacas-1.3.1.ebuild | 33 +++++++++++++++++++++++++++++++++
14 sci-biology/abacas/metadata.xml | 9 +++++++++
15 3 files changed, 51 insertions(+)
16
17 diff --git a/sci-biology/abacas/ChangeLog b/sci-biology/abacas/ChangeLog
18 new file mode 100644
19 index 0000000..7f3ad38
20 --- /dev/null
21 +++ b/sci-biology/abacas/ChangeLog
22 @@ -0,0 +1,9 @@
23 +# ChangeLog for sci-biology/abacas
24 +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
25 +# $Header: $
26 +
27 +*abacas-1.3.1 (31 Mar 2015)
28 +
29 + 31 Mar 2015; Martin Mokrejs <mmokrejs@×××××××××××××××.cz>
30 + +abacas-1.3.1.ebuild, +metadata.xml:
31 + sci-biology/abacas: new package
32
33 diff --git a/sci-biology/abacas/abacas-1.3.1.ebuild b/sci-biology/abacas/abacas-1.3.1.ebuild
34 new file mode 100644
35 index 0000000..e44862d
36 --- /dev/null
37 +++ b/sci-biology/abacas/abacas-1.3.1.ebuild
38 @@ -0,0 +1,33 @@
39 +# Copyright 1999-2015 Gentoo Foundation
40 +# Distributed under the terms of the GNU General Public License v2
41 +# $Header: $
42 +
43 +EAPI=5
44 +
45 +DESCRIPTION="Order and orientate contigs, design primers for gap closing"
46 +HOMEPAGE="http://abacas.sourceforge.net"
47 +SRC_URI="http://downloads.sourceforge.net/project/abacas/abacas.1.3.1.pl"
48 +
49 +LICENSE="GPL-2+"
50 +SLOT="0"
51 +KEYWORDS="~amd64"
52 +IUSE=""
53 +
54 +DEPEND=""
55 +RDEPEND="${DEPEND}
56 + dev-lang/perl
57 + sci-biology/mummer"
58 +
59 +S="${WORKDIR}"
60 +
61 +src_prepare(){
62 + cp -p "${DISTDIR}"/abacas.1.3.1.pl abacas.pl || die
63 + sed -i 's#/usr/local/bin/perl#/usr/bin/perl#' -i abacas.pl || die
64 +}
65 +src_install(){
66 + dobin abacas.pl
67 +}
68 +
69 +pkg_postinst(){
70 + einfo "To view the results use Artemis ACT (sci-biology/artemis)"
71 +}
72
73 diff --git a/sci-biology/abacas/metadata.xml b/sci-biology/abacas/metadata.xml
74 new file mode 100644
75 index 0000000..2bc8930
76 --- /dev/null
77 +++ b/sci-biology/abacas/metadata.xml
78 @@ -0,0 +1,9 @@
79 +<?xml version="1.0" encoding="UTF-8"?>
80 +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
81 +<pkgmetadata>
82 + <herd>sci-biology</herd>
83 + <maintainer>
84 + <email>mmokrejs@×××××××××××××××.cz</email>
85 + <name>Martin Mokrejs</name>
86 + </maintainer>
87 +</pkgmetadata>