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commit: 3b0ca41e88d8131cf6aa944ff3da23ff743bd3a0 |
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Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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AuthorDate: Tue Mar 31 16:19:08 2015 +0000 |
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Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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CommitDate: Tue Mar 31 16:19:08 2015 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=3b0ca41e |
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|
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sci-biology/abacas: new package |
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|
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Package-Manager: portage-2.2.18 |
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|
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sci-biology/abacas/ChangeLog | 9 +++++++++ |
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sci-biology/abacas/abacas-1.3.1.ebuild | 33 +++++++++++++++++++++++++++++++++ |
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sci-biology/abacas/metadata.xml | 9 +++++++++ |
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3 files changed, 51 insertions(+) |
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|
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diff --git a/sci-biology/abacas/ChangeLog b/sci-biology/abacas/ChangeLog |
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new file mode 100644 |
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index 0000000..7f3ad38 |
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--- /dev/null |
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+++ b/sci-biology/abacas/ChangeLog |
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@@ -0,0 +1,9 @@ |
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+# ChangeLog for sci-biology/abacas |
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+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 |
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+# $Header: $ |
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+ |
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+*abacas-1.3.1 (31 Mar 2015) |
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+ |
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+ 31 Mar 2015; Martin Mokrejs <mmokrejs@×××××××××××××××.cz> |
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+ +abacas-1.3.1.ebuild, +metadata.xml: |
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+ sci-biology/abacas: new package |
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|
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diff --git a/sci-biology/abacas/abacas-1.3.1.ebuild b/sci-biology/abacas/abacas-1.3.1.ebuild |
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new file mode 100644 |
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index 0000000..e44862d |
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--- /dev/null |
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+++ b/sci-biology/abacas/abacas-1.3.1.ebuild |
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@@ -0,0 +1,33 @@ |
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+# Copyright 1999-2015 Gentoo Foundation |
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+# Distributed under the terms of the GNU General Public License v2 |
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+# $Header: $ |
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+ |
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+EAPI=5 |
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+ |
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+DESCRIPTION="Order and orientate contigs, design primers for gap closing" |
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+HOMEPAGE="http://abacas.sourceforge.net" |
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+SRC_URI="http://downloads.sourceforge.net/project/abacas/abacas.1.3.1.pl" |
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+ |
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+LICENSE="GPL-2+" |
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+SLOT="0" |
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+KEYWORDS="~amd64" |
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+IUSE="" |
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+ |
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+DEPEND="" |
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+RDEPEND="${DEPEND} |
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+ dev-lang/perl |
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+ sci-biology/mummer" |
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+ |
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+S="${WORKDIR}" |
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+ |
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+src_prepare(){ |
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+ cp -p "${DISTDIR}"/abacas.1.3.1.pl abacas.pl || die |
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+ sed -i 's#/usr/local/bin/perl#/usr/bin/perl#' -i abacas.pl || die |
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+} |
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+src_install(){ |
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+ dobin abacas.pl |
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+} |
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+ |
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+pkg_postinst(){ |
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+ einfo "To view the results use Artemis ACT (sci-biology/artemis)" |
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+} |
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|
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diff --git a/sci-biology/abacas/metadata.xml b/sci-biology/abacas/metadata.xml |
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new file mode 100644 |
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index 0000000..2bc8930 |
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--- /dev/null |
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+++ b/sci-biology/abacas/metadata.xml |
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@@ -0,0 +1,9 @@ |
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+<?xml version="1.0" encoding="UTF-8"?> |
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+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
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+<pkgmetadata> |
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+ <herd>sci-biology</herd> |
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+ <maintainer> |
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+ <email>mmokrejs@×××××××××××××××.cz</email> |
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+ <name>Martin Mokrejs</name> |
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+ </maintainer> |
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+</pkgmetadata> |