[gentoo-commits] proj/sci:ccp4 commit in: sci-libs/clipper/

[Justin Lecher]

commit:     327d43bda40be964b9cf3f01e0eae100640ad85d
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Thu May 30 12:18:25 2013 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Thu May 30 12:18:25 2013 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=327d43bd

sci-libs/clipper: Version BUmp

Package-Manager: portage-2.2.0_alpha177

---
 sci-libs/clipper/ChangeLog                    | 106 ++++++++++++++++++++++++++
 sci-libs/clipper/clipper-2.1_p20130528.ebuild |  55 +++++++++++++
 sci-libs/clipper/metadata.xml                 |   8 ++
 3 files changed, 169 insertions(+)

diff --git a/sci-libs/clipper/ChangeLog b/sci-libs/clipper/ChangeLog
new file mode 100644
index 0000000..6b29dab
--- /dev/null
+++ b/sci-libs/clipper/ChangeLog
@@ -0,0 +1,106 @@
+# ChangeLog for sci-libs/clipper
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/clipper/ChangeLog,v 1.22 2013/05/28 18:15:50 jlec Exp $
+
+*clipper-2.1_p20130528 (30 May 2013)
+
+  30 May 2013; Justin Lecher <jlec@g.o> +clipper-2.1_p20130528.ebuild,
+  +metadata.xml:
+  Version BUmp
+
+*clipper-2.1_p100511-r1 (28 May 2013)
+
+  28 May 2013; Justin Lecher <jlec@g.o> +clipper-2.1_p100511-r1.ebuild,
+  +files/2.1_p100511-makefile.patch,
+  +files/clipper-2.1_p100511-outofsourcebuild.patch, metadata.xml:
+  Rename for new version schema
+
+  10 Jul 2012; Justin Lecher <jlec@g.o> -clipper-20100511.ebuild:
+  Cleaned old
+
+  10 Jul 2012; Brent Baude <ranger@g.o> clipper-20100511-r1.ebuild:
+  Marking clipper-20100511-r1 ppc for bug 421645
+
+  18 Jun 2012; Agostino Sarubbo <ago@g.o> clipper-20100511-r1.ebuild:
+  Stable for amd64, wrt bug #421645
+
+  17 Jun 2012; Jeff Horelick <jdhore@g.o> clipper-20100511-r1.ebuild:
+  marked x86 per bug 421645
+
+  17 Jun 2012; Justin Lecher <jlec@g.o> clipper-20100511-r1.ebuild,
+  +files/clipper-20100511-outofsourcebuild.patch:
+  Fix out of source build test failure, #421639
+
+  10 Feb 2012; Justin Lecher <jlec@g.o> +files/20100511-makefile.patch,
+  clipper-20100511-r1.ebuild:
+  Drop -g from FLAGS
+
+  03 Feb 2012; Justin Lecher <jlec@g.o> clipper-20100511-r1.ebuild:
+  Moved to autotools-utils.eclass
+
+*clipper-20100511-r1 (26 Jun 2011)
+
+  26 Jun 2011; Justin Lecher <jlec@g.o> clipper-20100511.ebuild,
+  +clipper-20100511-r1.ebuild, metadata.xml:
+  Bumped EAPI
+
+  16 Jan 2011; Kacper Kowalik <xarthisius@g.o>
+  clipper-20100511.ebuild:
+  marked ~ppc wrt #303931
+
+  15 Jan 2011; Justin Lecher <jlec@g.o> -clipper-20091215.ebuild,
+  -clipper-20100416.ebuild:
+  Cleaned old
+
+  20 Dec 2010; Markos Chandras <hwoarang@g.o> clipper-20100511.ebuild:
+  Stable on amd64 wrt bug #348872
+
+  18 Dec 2010; Pawel Hajdan jr <phajdan.jr@g.o>
+  clipper-20100511.ebuild:
+  x86 stable wrt bug #348872
+
+*clipper-20100511 (11 May 2010)
+
+  11 May 2010; Justin Lecher <jlec@g.o> +clipper-20100511.ebuild:
+  Version Bump
+
+*clipper-20100416 (16 Apr 2010)
+
+  16 Apr 2010; Justin Lecher <jlec@g.o>
+  -files/20070528-as-needed.patch, +clipper-20100416.ebuild,
+  -files/20070907-as-needed.patch:
+  Version Bump, removed old patches
+
+  05 Apr 2010; Justin Lecher <jlec@g.o> clipper-20091215.ebuild:
+  Keyworded for ~x86-linux ~amd64-linux, tested by me
+
+  26 Feb 2010; Justin Lecher <jlec@g.o>
+  clipper-20091215.ebuild:
+  Missing sci-libs/mmdb DEP added
+
+*clipper-20091215 (04 Feb 2010)
+
+  04 Feb 2010; Justin Lecher <jlec@g.o>
+  +files/20091215-missing-var.patch, -clipper-20070528.ebuild,
+  -clipper-20070907.ebuild, +clipper-20091215.ebuild:
+  Version Bump, fix for bug 246293 & 250087
+  Removed old versions
+
+*clipper-20070907 (19 Dec 2007)
+
+  19 Dec 2007; Donnie Berkholz <dberkholz@g.o>;
+  +files/20070907-as-needed.patch, +clipper-20070907.ebuild:
+  Bump as a dependency of Coot 0.4 prereleases.
+
+  30 May 2007; Donnie Berkholz <dberkholz@g.o>;
+  clipper-20070528.ebuild:
+  Move the sed to change the includes to use clipper-2 to after the install,
+  so it compiles properly. Keyword ~ppc.
+
+*clipper-20070528 (29 May 2007)
+
+  29 May 2007; Donnie Berkholz <dberkholz@g.o>;
+  +files/20070528-as-needed.patch, +metadata.xml, +clipper-20070528.ebuild:
+  Add a slotted version of clipper. Version 1 is installed with ccp4-6, but we
+  need version 2 for coots 0.2 and newer.
+

diff --git a/sci-libs/clipper/clipper-2.1_p20130528.ebuild b/sci-libs/clipper/clipper-2.1_p20130528.ebuild
new file mode 100644
index 0000000..c796247
--- /dev/null
+++ b/sci-libs/clipper/clipper-2.1_p20130528.ebuild
@@ -0,0 +1,55 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/clipper/clipper-2.1_p100511-r1.ebuild,v 1.1 2013/05/28 18:15:50 jlec Exp $
+
+EAPI=4
+
+#AUTOTOOLS_AUTORECONF=true
+
+inherit autotools-utils eutils flag-o-matic
+
+MY_PV=${PV/_p/.}
+MY_P="${PN}-${MY_PV}"
+
+DESCRIPTION="Object-oriented libraries for crystallographic data and crystallographic computation"
+HOMEPAGE="http://www.ysbl.york.ac.uk/~cowtan/clipper/clipper.html"
+SRC_URI="ftp://ftp.ccp4.ac.uk/opensource/${MY_P}.tar.gz"
+
+LICENSE="LGPL-2.1"
+SLOT="0"
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
+IUSE="cctbx fortran static-libs"
+
+RDEPEND="
+	sci-libs/ccp4-libs
+	sci-libs/fftw
+	sci-libs/mmdb"
+DEPEND="${RDEPEND}"
+
+S="${WORKDIR}"/${MY_P}
+
+#PATCHES=()
+
+src_configure() {
+	# Recommended on ccp4bb/coot ML to fix crashes when calculating maps
+	# on 64-bit systems
+	append-flags -fno-strict-aliasing
+
+	local myeconfargs=(
+		--enable-ccp4
+		--enable-cif
+		--enable-cns
+		--enable-contrib
+		--enable-minimol
+		--enable-mmdb
+		--enable-mmdbold
+		--enable-phs
+		$(use_enable cctbx)
+		$(use_enable fortran)
+		)
+	autotools-utils_src_configure
+}
+
+src_test() {
+	emake -C "${AUTOTOOLS_BUILD_DIR}"/examples check
+}

diff --git a/sci-libs/clipper/metadata.xml b/sci-libs/clipper/metadata.xml
new file mode 100644
index 0000000..52c8da3
--- /dev/null
+++ b/sci-libs/clipper/metadata.xml
@@ -0,0 +1,8 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-chemistry</herd>
+  <use>
+    <flag name="cctbx">Build interface to <pkg>sci-libs/cctbx</pkg></flag>
+  </use>
+</pkgmetadata>