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commit: 3ed6ae45fdc67fedd3886c00b0117709c9c90ebe |
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Author: André Erdmann <dywi <AT> mailerd <DOT> de> |
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AuthorDate: Tue Aug 27 15:38:19 2013 +0000 |
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Commit: André Erdmann <dywi <AT> mailerd <DOT> de> |
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CommitDate: Tue Aug 27 15:38:19 2013 +0000 |
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URL: http://git.overlays.gentoo.org/gitweb/?p=proj/R_overlay.git;a=commit;h=3ed6ae45 |
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|
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per-repo selfdep rule files |
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|
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--- |
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config/simple-deprules.d/selfdeps | 49 ++++------------------------ |
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config/simple-deprules.d/selfdeps.d/README | 11 +++++++ |
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config/simple-deprules.d/selfdeps.d/sci-BIOC | 13 ++++++++ |
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config/simple-deprules.d/selfdeps.d/sci-CRAN | 40 +++++++++++++++++++++++ |
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4 files changed, 71 insertions(+), 42 deletions(-) |
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|
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diff --git a/config/simple-deprules.d/selfdeps b/config/simple-deprules.d/selfdeps |
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index 2037de2..63e49bc 100644 |
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--- a/config/simple-deprules.d/selfdeps |
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+++ b/config/simple-deprules.d/selfdeps |
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@@ -1,16 +1,11 @@ |
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-#deptype pkg,selfdep |
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+#! NOPARSE |
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+#! ERROR |
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+# Replaced by the selfdeps.d directory, which contains per-repo selfdep files. |
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+# |
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+# This file lists old rules, which are not yet included there. |
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+# |
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|
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-# FIXME: this may be incorrect |
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-~sci-R/BSgenome { |
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- BSgenome.Celegans.UCSC.ce2 |
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- BSgenome.Dmelanogaster.UCSC.dm3 |
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- BSgenome.Ecoli.NCBI.20080805 |
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- BSgenome.Hsapiens.UCSC.hg18 |
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- BSgenome.Hsapiens.UCSC.hg19 |
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- BSgenome.Mmusculus.UCSC.mm9 |
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- BSgenome.Rnorvegicus.UCSC.rn4 |
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- BSgenome.Scerevisiae.UCSC.sacCer2 |
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-} |
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+#deptype pkg,selfdep |
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|
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sci-R/chron :: get.hist.quote needs packagechron. |
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|
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@@ -20,38 +15,8 @@ sci-R/chron :: get.hist.quote needs packagechron. |
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CoCoObjects |
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CoCoRaw |
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} |
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- |
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-sci-R/csound { |
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- A valid copy of the Csound library must be present.Csound can be downloaded from http://www.csounds.com. Thelibrary is included in the default Windows and Mac OS Xdistributions |
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- playitbyr creates sound using the csound package |
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- which requires the free and open source software synthesizerCsound |
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-} |
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- |
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-~sci-R/mimR :: mim |
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- |
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-sci-R/MVA { |
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- white.test needs packagemva |
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- white.test needs package mva |
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-} |
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- |
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-sci-R/quadprog :: portfolio.optim needs package quadprog |
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- |
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-sci-R/rgl :: rgl packages for rendering |
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- |
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-~sci-R/sgeostat { |
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- sgeostat. |
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- geostat. |
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-} |
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- |
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sci-R/survival4 :: survival4 if survival models are to be used. |
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~sci-R/survival5 :: survival5 for some examples |
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sci-R/survival5 :: survival5 if survival models are to be used. |
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|
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~sci-R/VhayuR :: Vhayu |
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- |
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-sci-R/xgobi { |
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- xgobi must be installed additionally |
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- xgobi & xgvis programs: http://www.research.att.com/areas/stat/xgobi/ |
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-} |
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- |
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-~sci-R/BayesFactor :: BayesFactorPCL |
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|
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diff --git a/config/simple-deprules.d/selfdeps.d/README b/config/simple-deprules.d/selfdeps.d/README |
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new file mode 100644 |
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index 0000000..30b0051 |
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--- /dev/null |
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+++ b/config/simple-deprules.d/selfdeps.d/README |
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@@ -0,0 +1,11 @@ |
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+#! NOPARSE |
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+# |
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+# Use one file per repo "group" (=same category), so that category moves |
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+# can be edited easily (e.g. with sed). |
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+# |
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+# Don't forget one of |
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+# #deptype sys,selfdep |
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+# #deptype pkg,selfdep |
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+# at the top of each rule file. |
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+# |
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+#! ERROR |
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|
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diff --git a/config/simple-deprules.d/selfdeps.d/sci-BIOC b/config/simple-deprules.d/selfdeps.d/sci-BIOC |
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new file mode 100644 |
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index 0000000..4ade538 |
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--- /dev/null |
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+++ b/config/simple-deprules.d/selfdeps.d/sci-BIOC |
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@@ -0,0 +1,13 @@ |
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+#deptype pkg,selfdep |
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+ |
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+# FIXME: this may be incorrect |
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+~sci-R/BSgenome { |
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+ BSgenome.Celegans.UCSC.ce2 |
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+ BSgenome.Dmelanogaster.UCSC.dm3 |
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+ BSgenome.Ecoli.NCBI.20080805 |
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+ BSgenome.Hsapiens.UCSC.hg18 |
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+ BSgenome.Hsapiens.UCSC.hg19 |
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+ BSgenome.Mmusculus.UCSC.mm9 |
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+ BSgenome.Rnorvegicus.UCSC.rn4 |
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+ BSgenome.Scerevisiae.UCSC.sacCer2 |
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+} |
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|
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diff --git a/config/simple-deprules.d/selfdeps.d/sci-CRAN b/config/simple-deprules.d/selfdeps.d/sci-CRAN |
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new file mode 100644 |
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index 0000000..5935939 |
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--- /dev/null |
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+++ b/config/simple-deprules.d/selfdeps.d/sci-CRAN |
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@@ -0,0 +1,40 @@ |
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+#deptype pkg,selfdep |
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+ |
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+sci-CRAN/csound { |
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+ A valid copy of the Csound library must be present.Csound can be downloaded from http://www.csounds.com. Thelibrary is included in the default Windows and Mac OS Xdistributions |
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+ playitbyr creates sound using the csound package |
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+ which requires the free and open source software synthesizerCsound |
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+} |
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+ |
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+~sci-CRAN/mimR :: mim |
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+ |
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+sci-CRAN/quadprog :: portfolio.optim needs package quadprog |
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+ |
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+sci-CRAN/rgl :: rgl packages for rendering |
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+ |
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+sci-CRAN/MVA { |
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+ white.test needs packagemva |
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+ white.test needs package mva |
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+} |
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+ |
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+~sci-CRAN/sgeostat { |
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+ sgeostat. |
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+ geostat. |
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+} |
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+ |
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+# the following rule is _not_ correct |
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+# (the dependency strings listed here want the "xgobi" program from |
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+# http://www.research.att.com/areas/stat/xgobi/, not the R package) |
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+# |
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+## sci-CRAN/xgobi { |
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+## xgobi must be installed additionally |
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+## xgobi & xgvis programs: http://www.research.att.com/areas/stat/xgobi/ |
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+## } |
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+ |
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+~sci-CRAN/BayesFactor :: BayesFactorPCL |
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+ |
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+>=sci-CRAN/adimpro-0.4.2 :: adimpro (>= 0.4.2)The R-package 'adimpro' (for reading |
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+ |
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+sci-CRAN/adimpro { |
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+ The R-package 'adimpro' (for reading |
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+} |