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commit: a9691d02216b727d0d148a0048ebf3e425e6d8f4 |
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Author: David Seifert <soap <AT> gentoo <DOT> org> |
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AuthorDate: Wed Mar 8 21:35:40 2017 +0000 |
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Commit: David Seifert <soap <AT> gentoo <DOT> org> |
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CommitDate: Wed Mar 8 22:16:34 2017 +0000 |
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URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a9691d02 |
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|
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sci-biology/pals: Modernise to EAPI 6 |
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|
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Package-Manager: Portage-2.3.4, Repoman-2.3.2 |
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Closes: https://github.com/gentoo/gentoo/pull/4165 |
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|
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.../pals/files/pals-1.0-fix-build-system.patch | 34 ++++++++++++++++++++++ |
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.../pals/{pals-1.0.ebuild => pals-1.0-r1.ebuild} | 17 ++++++----- |
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2 files changed, 43 insertions(+), 8 deletions(-) |
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|
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diff --git a/sci-biology/pals/files/pals-1.0-fix-build-system.patch b/sci-biology/pals/files/pals-1.0-fix-build-system.patch |
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new file mode 100644 |
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index 00000000000..a020a697f85 |
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--- /dev/null |
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+++ b/sci-biology/pals/files/pals-1.0-fix-build-system.patch |
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@@ -0,0 +1,34 @@ |
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+Make build system honour user variables |
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+ |
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+--- a/Makefile |
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++++ b/Makefile |
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+@@ -1,6 +1,4 @@ |
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+-CFLAGS = -O3 -march=pentiumpro -mcpu=pentiumpro -funroll-loops -Winline -DNDEBUG=1 |
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+-LDLIBS = -lm -static |
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+-# LDLIBS = -lm |
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++LDLIBS = -lm |
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+ |
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+ OBJ = .o |
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+ EXE = |
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+@@ -8,18 +6,13 @@ |
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+ RM = rm -f |
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+ CP = cp |
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+ |
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+-GPP = g++ |
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+-LD = $(GPP) $(CFLAGS) |
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+-CPP = $(GPP) -c $(CFLAGS) |
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+-CC = gcc -c $(CFLAGS) |
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+- |
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+ all: pals |
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+ |
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+ CPPSRC = $(sort $(wildcard *.cpp)) |
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+ CPPOBJ = $(subst .cpp,.o,$(CPPSRC)) |
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+ |
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+-$(CPPOBJ): %.o: %.cpp |
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+- $(CPP) $< -o $@ |
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++%.o: %.cpp |
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++ $(CXX) $(CXXFLAGS) -DNDEBUG $(CPPFLAGS) -c $< -o $@ |
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+ |
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+ pals: $(CPPOBJ) |
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+- $(LD) -o pals $(CPPOBJ) $(LDLIBS) |
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++ $(CXX) $(LDFLAGS) $(CXXFLAGS) -o pals $(CPPOBJ) $(LDLIBS) |
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|
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diff --git a/sci-biology/pals/pals-1.0.ebuild b/sci-biology/pals/pals-1.0-r1.ebuild |
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similarity index 54% |
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rename from sci-biology/pals/pals-1.0.ebuild |
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rename to sci-biology/pals/pals-1.0-r1.ebuild |
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index 8db3efda19d..32579b9d075 100644 |
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--- a/sci-biology/pals/pals-1.0.ebuild |
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+++ b/sci-biology/pals/pals-1.0-r1.ebuild |
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@@ -1,14 +1,13 @@ |
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-# Copyright 1999-2009 Gentoo Foundation |
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+# Copyright 1999-2017 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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|
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-EAPI="2" |
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+EAPI=6 |
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|
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inherit toolchain-funcs |
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|
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DESCRIPTION="Pairwise Aligner for Long Sequences" |
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HOMEPAGE="http://www.drive5.com/pals/" |
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-#SRC_URI="http://www.drive5.com/pals/pals_source.tar.gz" |
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-SRC_URI="mirror://gentoo/${P}.tar.gz" |
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+SRC_URI="http://www.drive5.com/pals/pals_source.tar.gz -> ${P}.tar.gz" |
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|
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LICENSE="public-domain" |
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SLOT="0" |
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@@ -18,12 +17,14 @@ IUSE="" |
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RDEPEND="" |
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DEPEND="${RDEPEND}" |
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|
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-S="${WORKDIR}" |
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+S=${WORKDIR} |
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|
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-src_compile() { |
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- emake GPP="$(tc-getCXX)" CFLAGS="${CXXFLAGS}" || die |
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+PATCHES=( "${FILESDIR}"/${PN}-1.0-fix-build-system.patch ) |
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+ |
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+src_configure() { |
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+ tc-export CXX |
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} |
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|
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src_install() { |
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- dobin pals || die |
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+ dobin pals |
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} |