[gentoo-commits] gentoo-x86 commit in sci-biology/raxml: metadata.xml ChangeLog raxml-7.2.6.ebuild

[Justin Lecher (jlec)]

jlec        11/06/27 05:59:01

  Modified:             metadata.xml ChangeLog
  Added:                raxml-7.2.6.ebuild
  Log:
  Version BUmp, 312897
  
  (Portage version: 2.2.0_alpha41/cvs/Linux x86_64)

Revision  Changes    Path
1.3                  sci-biology/raxml/metadata.xml

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/raxml/metadata.xml?rev=1.3&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/raxml/metadata.xml?rev=1.3&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/raxml/metadata.xml?r1=1.2&r2=1.3

Index: metadata.xml
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/raxml/metadata.xml,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- metadata.xml	21 Jun 2011 06:38:10 -0000	1.2
+++ metadata.xml	27 Jun 2011 05:59:01 -0000	1.3
@@ -6,5 +6,7 @@
 		<name>Andrey Kislyuk</name>
 	</maintainer>
 	<herd>sci-biology</herd>
-	<use><flag name='sse3'>Enable optimization for SSE3 capable chips</flag></use>
+	<use>
+		<flag name="sse3">Enable optimization for SSE3 capable chips</flag>
+	</use>
 </pkgmetadata>



1.7                  sci-biology/raxml/ChangeLog

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/raxml/ChangeLog?rev=1.7&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/raxml/ChangeLog?rev=1.7&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/raxml/ChangeLog?r1=1.6&r2=1.7

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/raxml/ChangeLog,v
retrieving revision 1.6
retrieving revision 1.7
diff -u -r1.6 -r1.7
--- ChangeLog	21 Jun 2011 06:38:10 -0000	1.6
+++ ChangeLog	27 Jun 2011 05:59:01 -0000	1.7
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/raxml
 # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/raxml/ChangeLog,v 1.6 2011/06/21 06:38:10 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/raxml/ChangeLog,v 1.7 2011/06/27 05:59:01 jlec Exp $
+
+*raxml-7.2.6 (27 Jun 2011)
+
+  27 Jun 2011; Justin Lecher <jlec@g.o> +raxml-7.2.6.ebuild,
+  +files/raxml-7.2.6-makefile.patch, metadata.xml:
+  Version BUmp, 312897
 
 *raxml-7.2.5-r1 (21 Jun 2011)
 



1.1                  sci-biology/raxml/raxml-7.2.6.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/raxml/raxml-7.2.6.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/raxml/raxml-7.2.6.ebuild?rev=1.1&content-type=text/plain

Index: raxml-7.2.6.ebuild
===================================================================
# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/raxml/raxml-7.2.6.ebuild,v 1.1 2011/06/27 05:59:01 jlec Exp $

EAPI=4

inherit eutils flag-o-matic toolchain-funcs

DESCRIPTION="A Program for Sequential, Parallel & Distributed Inference of Large Phylogenetic Trees"
HOMEPAGE="http://wwwkramer.in.tum.de/exelixis/software.html"
SRC_URI="http://wwwkramer.in.tum.de/exelixis/software/RAxML-${PV}.tar.bz2"

SLOT="0"
LICENSE="GPL-2"
KEYWORDS="~amd64 ~x86"
IUSE="sse3 +threads"

# mpi is not supported in version 7.2.2. mpi is enabled by adding -DPARALLEL to CFLAGS
DEPEND="" # mpi? ( virtual/mpi )"
RDEPEND="${DEPEND}"

S="${WORKDIR}/RAxML-${PV}"

src_prepare() {
	epatch "${FILESDIR}"/${P}-makefile.patch

	use sse3 && append-cflags -D__SIM_SSE3
	use threads && \
		append-cflags -D_USE_PTHREADS && \
		append-ldflags -pthread

	tc-export CC
}

src_compile() {
	emake -f Makefile.gcc
}

src_install() {
	dobin raxmlHPC
}