Gentoo Archives: gentoo-commits

From: Andrew Ammerlaan <andrewammerlaan@g.o>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] repo/gentoo:master commit in: sci-libs/avogadrolibs/, sci-libs/avogadrolibs/files/
Date: Wed, 07 Sep 2022 09:55:14
Message-Id: 1662544495.99722c1e15796d7b5b60d59a43b1bc73f0657eea.andrewammerlaan@gentoo
1 commit: 99722c1e15796d7b5b60d59a43b1bc73f0657eea
2 Author: Aritz Erkiaga <aerkiaga3 <AT> gmail <DOT> com>
3 AuthorDate: Sat Sep 3 15:57:03 2022 +0000
4 Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
5 CommitDate: Wed Sep 7 09:54:55 2022 +0000
6 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=99722c1e
7
8 Backport critical fixes to sci-libs/avogadrolibs
9
10 Signed-off-by: Aritz Erkiaga <aerkiaga3 <AT> gmail.com>
11 Closes: https://bugs.gentoo.org/868132
12 Closes: https://github.com/gentoo/gentoo/pull/27128
13 Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>
14
15 ...1.95.1.ebuild => avogadrolibs-1.95.1-r1.ebuild} | 1 +
16 .../avogadrolibs-1.95.1-usability_backport.patch | 81 ++++++++++++++++++++++
17 2 files changed, 82 insertions(+)
18
19 diff --git a/sci-libs/avogadrolibs/avogadrolibs-1.95.1.ebuild b/sci-libs/avogadrolibs/avogadrolibs-1.95.1-r1.ebuild
20 similarity index 97%
21 rename from sci-libs/avogadrolibs/avogadrolibs-1.95.1.ebuild
22 rename to sci-libs/avogadrolibs/avogadrolibs-1.95.1-r1.ebuild
23 index 2a3a1c7cdb9b..ea0659f222d9 100644
24 --- a/sci-libs/avogadrolibs/avogadrolibs-1.95.1.ebuild
25 +++ b/sci-libs/avogadrolibs/avogadrolibs-1.95.1-r1.ebuild
26 @@ -47,6 +47,7 @@ BDEPEND="
27 PATCHES=(
28 "${FILESDIR}/"${PN}-1.91.0_pre20180406-bundled-genxrdpattern.patch
29 "${FILESDIR}/"${PN}-1.95.1-tests.patch
30 + "${FILESDIR}/"${PN}-1.95.1-usability_backport.patch
31 )
32
33 src_unpack() {
34
35 diff --git a/sci-libs/avogadrolibs/files/avogadrolibs-1.95.1-usability_backport.patch b/sci-libs/avogadrolibs/files/avogadrolibs-1.95.1-usability_backport.patch
36 new file mode 100644
37 index 000000000000..07a32023600e
38 --- /dev/null
39 +++ b/sci-libs/avogadrolibs/files/avogadrolibs-1.95.1-usability_backport.patch
40 @@ -0,0 +1,81 @@
41 +From 56c67fff7dd7ec84b2f2b5c2e5beaec13981e408 Mon Sep 17 00:00:00 2001
42 +From: Aritz Erkiaga <aerkiaga3@×××××.com>
43 +Date: Sat, 3 Sep 2022 16:54:55 +0200
44 +Subject: [PATCH 1/3] Fix erratic editing behavior
45 +
46 +Signed-off-by: Aritz Erkiaga <aerkiaga3@×××××.com>
47 +---
48 + avogadro/qtgui/rwmolecule_undo.h | 2 +-
49 + 1 file changed, 1 insertion(+), 1 deletion(-)
50 +
51 +diff --git a/avogadro/qtgui/rwmolecule_undo.h b/avogadro/qtgui/rwmolecule_undo.h
52 +index de5bdd33..20768066 100644
53 +--- a/avogadro/qtgui/rwmolecule_undo.h
54 ++++ b/avogadro/qtgui/rwmolecule_undo.h
55 +@@ -89,7 +89,7 @@ public:
56 + {
57 + assert(m_molecule.atomCount() == m_atomId);
58 + if (m_usingPositions)
59 +- m_molecule.addAtom(m_atomicNumber, Vector3::Zero(), m_atomId);
60 ++ m_molecule.addAtom(m_atomicNumber, Vector3::Zero(), m_atomUid);
61 + else
62 + m_molecule.addAtom(m_atomicNumber, m_atomUid);
63 + m_molecule.layer().addAtom(m_layer, m_atomId);
64 +--
65 +2.34.1
66 +
67 +
68 +From 5159ea1a9629ad82130670767cc25c5065f9627c Mon Sep 17 00:00:00 2001
69 +From: Aritz Erkiaga <aerkiaga3@×××××.com>
70 +Date: Sat, 3 Sep 2022 16:55:26 +0200
71 +Subject: [PATCH 2/3] Fix Manipulator Tool not working at all
72 +
73 +Signed-off-by: Aritz Erkiaga <aerkiaga3@×××××.com>
74 +---
75 + avogadro/qtplugins/manipulator/manipulator.cpp | 2 +-
76 + 1 file changed, 1 insertion(+), 1 deletion(-)
77 +
78 +diff --git a/avogadro/qtplugins/manipulator/manipulator.cpp b/avogadro/qtplugins/manipulator/manipulator.cpp
79 +index 19dc51ac..29559dd0 100644
80 +--- a/avogadro/qtplugins/manipulator/manipulator.cpp
81 ++++ b/avogadro/qtplugins/manipulator/manipulator.cpp
82 +@@ -129,7 +129,7 @@ QUndoCommand* Manipulator::mouseMoveEvent(QMouseEvent* e)
83 + Vector2f windowPos(e->localPos().x(), e->localPos().y());
84 +
85 + if (mol->isSelectionEmpty() && m_object.type == Rendering::AtomType &&
86 +- m_object.molecule == mol) {
87 ++ m_object.molecule == &m_molecule->molecule()) {
88 + // translate single atom position
89 + RWAtom atom = m_molecule->atom(m_object.index);
90 + Vector3f oldPos(atom.position3d().cast<float>());
91 +--
92 +2.34.1
93 +
94 +
95 +From f38bfbc88f0722a66ab298ff26073874b5f73634 Mon Sep 17 00:00:00 2001
96 +From: Aritz Erkiaga <aerkiaga3@×××××.com>
97 +Date: Sat, 3 Sep 2022 16:55:59 +0200
98 +Subject: [PATCH 3/3] Fix Bond Centric Tool not working at all
99 +
100 +Signed-off-by: Aritz Erkiaga <aerkiaga3@×××××.com>
101 +---
102 + avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp | 3 +--
103 + 1 file changed, 1 insertion(+), 2 deletions(-)
104 +
105 +diff --git a/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp b/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp
106 +index 79112899..3a853057 100644
107 +--- a/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp
108 ++++ b/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp
109 +@@ -342,8 +342,7 @@ QUndoCommand* BondCentricTool::mousePressEvent(QMouseEvent* e)
110 + Rendering::Identifier ident = m_renderer->hit(e->pos().x(), e->pos().y());
111 +
112 + // If no hits, return. Also ensure that the hit molecule is the one we expect.
113 +- const Core::Molecule* mol = &m_molecule->molecule();
114 +- if (!ident.isValid() || ident.molecule != mol)
115 ++ if (!ident.isValid() || ident.molecule != &m_molecule->molecule())
116 + return nullptr;
117 +
118 + // If the hit is a left click on a bond, make it the selected bond and map
119 +--
120 +2.34.1
121 +