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pinkbyte 14/02/05 08:16:11 |
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|
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Modified: ChangeLog |
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Added: cufflinks-1.3.0-r1.ebuild |
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Removed: cufflinks-1.3.0.ebuild |
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Log: |
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Revision bump: EAPI 5, add subslot to Boost dependency, fix compatibility with Automake 1.14, wrt bug #499046. Drop old revision |
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(Portage version: 2.2.8/cvs/Linux x86_64, signed Manifest commit with key 0x1F357D42) |
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Revision Changes Path |
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1.6 sci-biology/cufflinks/ChangeLog |
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|
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/cufflinks/ChangeLog?rev=1.6&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/cufflinks/ChangeLog?rev=1.6&content-type=text/plain |
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diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/cufflinks/ChangeLog?r1=1.5&r2=1.6 |
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Index: ChangeLog |
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=================================================================== |
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RCS file: /var/cvsroot/gentoo-x86/sci-biology/cufflinks/ChangeLog,v |
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retrieving revision 1.5 |
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retrieving revision 1.6 |
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diff -u -r1.5 -r1.6 |
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--- ChangeLog 11 Mar 2013 15:00:28 -0000 1.5 |
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+++ ChangeLog 5 Feb 2014 08:16:11 -0000 1.6 |
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@@ -1,6 +1,13 @@ |
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# ChangeLog for sci-biology/cufflinks |
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-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 |
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-# $Header: /var/cvsroot/gentoo-x86/sci-biology/cufflinks/ChangeLog,v 1.5 2013/03/11 15:00:28 jlec Exp $ |
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+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 |
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+# $Header: /var/cvsroot/gentoo-x86/sci-biology/cufflinks/ChangeLog,v 1.6 2014/02/05 08:16:11 pinkbyte Exp $ |
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+ |
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+*cufflinks-1.3.0-r1 (05 Feb 2014) |
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+ |
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+ 05 Feb 2014; Sergey Popov <pinkbyte@g.o> -cufflinks-1.3.0.ebuild, |
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+ +cufflinks-1.3.0-r1.ebuild, files/cufflinks-1.3.0-autotools.patch: |
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+ Revision bump: EAPI 5, add subslot to Boost dependency, fix compatibility |
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+ with Automake 1.14, wrt bug #499046. Drop old revision |
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|
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11 Mar 2013; Justin Lecher <jlec@g.o> metadata.xml: |
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Drop Andrey as maintainer so that bugs get assigned to sci-biology directly |
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1.1 sci-biology/cufflinks/cufflinks-1.3.0-r1.ebuild |
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/cufflinks/cufflinks-1.3.0-r1.ebuild?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/cufflinks/cufflinks-1.3.0-r1.ebuild?rev=1.1&content-type=text/plain |
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Index: cufflinks-1.3.0-r1.ebuild |
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=================================================================== |
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# Copyright 1999-2014 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/cufflinks/cufflinks-1.3.0-r1.ebuild,v 1.1 2014/02/05 08:16:11 pinkbyte Exp $ |
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EAPI=5 |
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AUTOTOOLS_AUTORECONF=yes |
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inherit autotools-utils |
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DESCRIPTION="Transcript assembly, differential expression, and differential regulation for RNA-Seq" |
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HOMEPAGE="http://cufflinks.cbcb.umd.edu/" |
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SRC_URI="http://cufflinks.cbcb.umd.edu/downloads/${P}.tar.gz" |
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|
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SLOT="0" |
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LICENSE="Artistic" |
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IUSE="debug" |
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KEYWORDS="~amd64 ~x86" |
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|
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DEPEND=" |
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>=sci-biology/samtools-0.1.18 |
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dev-libs/boost:=" |
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RDEPEND="${DEPEND}" |
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|
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PATCHES=( |
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"${FILESDIR}"/${P}-autotools.patch |
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"${FILESDIR}"/${P}-boost.patch |
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"${FILESDIR}"/${P}-gcc-4.7.patch |
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) |
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|
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src_configure() { |
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local myeconfargs=( |
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--disable-optim |
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--with-boost-libdir="${EPREFIX}/usr/$(get_libdir)/" |
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--with-bam="${EPREFIX}/usr/" |
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$(use_enable debug) |
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) |
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autotools-utils_src_configure |
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} |
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