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jlec 13/03/02 13:09:15 |
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Modified: ncbi-tools-2.2.26-r2.ebuild ChangeLog |
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Log: |
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sci-biology/ncbi-tools: Fix typo in sed construct, #459920; add patch to fix buffer overflows |
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(Portage version: 2.2.0_alpha164/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916) |
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Revision Changes Path |
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1.4 sci-biology/ncbi-tools/ncbi-tools-2.2.26-r2.ebuild |
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/ncbi-tools/ncbi-tools-2.2.26-r2.ebuild?rev=1.4&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/ncbi-tools/ncbi-tools-2.2.26-r2.ebuild?rev=1.4&content-type=text/plain |
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diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/ncbi-tools/ncbi-tools-2.2.26-r2.ebuild?r1=1.3&r2=1.4 |
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Index: ncbi-tools-2.2.26-r2.ebuild |
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=================================================================== |
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RCS file: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ncbi-tools-2.2.26-r2.ebuild,v |
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retrieving revision 1.3 |
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retrieving revision 1.4 |
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diff -u -r1.3 -r1.4 |
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--- ncbi-tools-2.2.26-r2.ebuild 1 Mar 2013 19:34:47 -0000 1.3 |
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+++ ncbi-tools-2.2.26-r2.ebuild 2 Mar 2013 13:09:15 -0000 1.4 |
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@@ -1,6 +1,6 @@ |
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# Copyright 1999-2013 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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-# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ncbi-tools-2.2.26-r2.ebuild,v 1.3 2013/03/01 19:34:47 ago Exp $ |
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+# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ncbi-tools-2.2.26-r2.ebuild,v 1.4 2013/03/02 13:09:15 jlec Exp $ |
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EAPI=5 |
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@@ -37,7 +37,9 @@ |
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} |
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src_prepare() { |
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- epatch "${FILESDIR}"/${PN}-extra_vib.patch |
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+ epatch \ |
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+ "${FILESDIR}"/${PN}-extra_vib.patch \ |
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+ "${FILESDIR}"/${P}-bfr-overflow.patch |
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if use ppc || use ppc64; then |
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epatch "${FILESDIR}"/${PN}-lop.patch |
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@@ -56,7 +58,7 @@ |
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# Apply user C flags... |
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cd "${S}"/platform |
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sed \ |
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- -e "s:-O[s0-9]\?:asd:g" \ |
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+ -e "s:-O[s0-9]\?::g" \ |
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-e 's:-m\(cpu\|arch\)=[a-zA-Z0-9]*::g' \ |
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-e 's:-x[A-Z]*::g' \ |
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-e 's:-pipe::g' \ |
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1.92 sci-biology/ncbi-tools/ChangeLog |
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/ncbi-tools/ChangeLog?rev=1.92&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/ncbi-tools/ChangeLog?rev=1.92&content-type=text/plain |
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diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/ncbi-tools/ChangeLog?r1=1.91&r2=1.92 |
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Index: ChangeLog |
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=================================================================== |
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RCS file: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ChangeLog,v |
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retrieving revision 1.91 |
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retrieving revision 1.92 |
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diff -u -r1.91 -r1.92 |
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--- ChangeLog 1 Mar 2013 19:34:47 -0000 1.91 |
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+++ ChangeLog 2 Mar 2013 13:09:15 -0000 1.92 |
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@@ -1,6 +1,10 @@ |
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# ChangeLog for sci-biology/ncbi-tools |
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# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 |
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-# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ChangeLog,v 1.91 2013/03/01 19:34:47 ago Exp $ |
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+# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ChangeLog,v 1.92 2013/03/02 13:09:15 jlec Exp $ |
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+ |
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+ 02 Mar 2013; Justin Lecher <jlec@g.o> ncbi-tools-2.2.26-r2.ebuild, |
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+ +files/ncbi-tools-2.2.26-bfr-overflow.patch: |
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+ Fix typo in sed construct, #459920; add patch to fix buffer overflows |
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01 Mar 2013; Agostino Sarubbo <ago@g.o> ncbi-tools-2.2.26-r2.ebuild: |
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Stable for x86, wrt bug #458112 |
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