[gentoo-commits] proj/sci:master commit in: sci-biology/ampliconnoise/

[Horea Christian]

commit:     ecf1b90b64015fb2b9c1684c7ddd1c3b98fc01e1
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Sun Sep 27 09:18:53 2020 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Sun Sep 27 09:18:53 2020 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=ecf1b90b

sci-biology/ampliconnoise: removed discontinued package

Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 .../ampliconnoise/ampliconnoise-1.27.ebuild        | 43 ----------------------
 sci-biology/ampliconnoise/metadata.xml             | 12 ------
 2 files changed, 55 deletions(-)

diff --git a/sci-biology/ampliconnoise/ampliconnoise-1.27.ebuild b/sci-biology/ampliconnoise/ampliconnoise-1.27.ebuild
deleted file mode 100644
index 5555cf4c6..000000000
--- a/sci-biology/ampliconnoise/ampliconnoise-1.27.ebuild
+++ /dev/null
@@ -1,43 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-DESCRIPTION="Noise removal from pyrosequenced amplicons"
-HOMEPAGE="http://code.google.com/p/ampliconnoise/"
-SRC_URI="
-	http://ampliconnoise.googlecode.com/files/AmpliconNoiseV${PV}.tar.gz
-	http://ampliconnoise.googlecode.com/files/TutorialV1.22.tar.gz
-	http://ampliconnoise.googlecode.com/files/DiversityEstimates.tar.gz"
-
-LICENSE="LGPL-3"
-SLOT="0"
-KEYWORDS=""
-IUSE="mpi"
-RDEPEND="
-	mpi? ( virtual/mpi )
-	sci-libs/gsl
-	sci-biology/mafft
-	sci-biology/usearch-bin
-	dev-haskell/biosff || ( sci-biology/flower )"
-	# sci-biology/flower::haskell installs renamed binaries to avoid file collision
-	# unfortunately flower executable from the two packages
-	# dev-haskell/biosff::science vs. sci-biology/flower::haskell
-	# do not offer same cmdline options (upstream did not sync the two packages)
-
-S="${WORKDIR}/AmpliconNoiseV1.27"
-
-src_compile(){
-	# FIXME: the Makefile forcibly calls 'mpicc'
-	emake
-	cd ../DiversityEstimates || die
-	emake
-}
-
-src_install(){
-	default
-	dodoc "${WORKDIR}"/TutorialV1.22/Tutorial.ppt "${WORKDIR}"/TutorialV1.22/SmallTwins.* Doc.pdf
-	mv bin "${DESTDIR}/${EPREFIX}"/usr/ || die
-	insinto /usr/share/"${PN}"/scripts
-	doins Scripts/*.pl Scripts/*.sh
-}

diff --git a/sci-biology/ampliconnoise/metadata.xml b/sci-biology/ampliconnoise/metadata.xml
deleted file mode 100644
index 138cb7705..000000000
--- a/sci-biology/ampliconnoise/metadata.xml
+++ /dev/null
@@ -1,12 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="person">
-		<email>mmokrejs@×××××××××××××××.cz</email>
-		<name>Martin Mokrejs</name>
-	</maintainer>
-	<maintainer type="project">
-		<email>sci-biology@g.o</email>
-		<name>Gentoo Biology Project</name>
-	</maintainer>
-</pkgmetadata>