From: | "Justin Lecher (jlec)" <jlec@g.o> |
---|---|
To: | gentoo-commits@l.g.o |
Subject: | [gentoo-commits] gentoo-x86 commit in sci-biology/biopython: biopython-1.62-r1.ebuild ChangeLog |
Date: | Sun, 29 Dec 2013 00:57:03 |
Message-Id: | 20131229005658.D31392004C@flycatcher.gentoo.org |
1 | jlec 13/12/29 00:56:58 |
2 | |
3 | Modified: ChangeLog |
4 | Added: biopython-1.62-r1.ebuild |
5 | Log: |
6 | sci-biology/biopython: Add additional patch from Martin Mokrejš |
7 | |
8 | (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!) |
9 | |
10 | Revision Changes Path |
11 | 1.73 sci-biology/biopython/ChangeLog |
12 | |
13 | file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/ChangeLog?rev=1.73&view=markup |
14 | plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/ChangeLog?rev=1.73&content-type=text/plain |
15 | diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/ChangeLog?r1=1.72&r2=1.73 |
16 | |
17 | Index: ChangeLog |
18 | =================================================================== |
19 | RCS file: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v |
20 | retrieving revision 1.72 |
21 | retrieving revision 1.73 |
22 | diff -u -r1.72 -r1.73 |
23 | --- ChangeLog 17 Sep 2013 16:07:56 -0000 1.72 |
24 | +++ ChangeLog 29 Dec 2013 00:56:58 -0000 1.73 |
25 | @@ -1,6 +1,12 @@ |
26 | # ChangeLog for sci-biology/biopython |
27 | # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 |
28 | -# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.72 2013/09/17 16:07:56 jlec Exp $ |
29 | +# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.73 2013/12/29 00:56:58 jlec Exp $ |
30 | + |
31 | +*biopython-1.62-r1 (29 Dec 2013) |
32 | + |
33 | + 29 Dec 2013; Justin Lecher <jlec@g.o> +biopython-1.62-r1.ebuild, |
34 | + +files/biopython-1.62-SffIO.patch: |
35 | + Add additional patch from Martin Mokrejš |
36 | |
37 | *biopython-1.62 (17 Sep 2013) |
38 | |
39 | |
40 | |
41 | |
42 | 1.1 sci-biology/biopython/biopython-1.62-r1.ebuild |
43 | |
44 | file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/biopython-1.62-r1.ebuild?rev=1.1&view=markup |
45 | plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/biopython-1.62-r1.ebuild?rev=1.1&content-type=text/plain |
46 | |
47 | Index: biopython-1.62-r1.ebuild |
48 | =================================================================== |
49 | # Copyright 1999-2013 Gentoo Foundation |
50 | # Distributed under the terms of the GNU General Public License v2 |
51 | # $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.62-r1.ebuild,v 1.1 2013/12/29 00:56:58 jlec Exp $ |
52 | |
53 | EAPI=5 |
54 | |
55 | PYTHON_COMPAT=( python{2_6,2_7} ) |
56 | |
57 | inherit distutils-r1 eutils |
58 | |
59 | DESCRIPTION="Python modules for computational molecular biology" |
60 | HOMEPAGE="http://www.biopython.org/ http://pypi.python.org/pypi/biopython/" |
61 | SRC_URI="http://www.biopython.org/DIST/${P}.tar.gz" |
62 | |
63 | LICENSE="HPND" |
64 | SLOT="0" |
65 | KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux" |
66 | IUSE="mysql postgres" |
67 | |
68 | REQUIRED_USE="${PYTHON_REQUIRED_USE}" |
69 | |
70 | RDEPEND="${PYTHON_DEPS} |
71 | dev-python/matplotlib[${PYTHON_USEDEP}] |
72 | dev-python/networkx[${PYTHON_USEDEP}] |
73 | dev-python/numpy[${PYTHON_USEDEP}] |
74 | dev-python/pygraphviz[${PYTHON_USEDEP}] |
75 | dev-python/reportlab[${PYTHON_USEDEP}] |
76 | media-gfx/pydot[${PYTHON_USEDEP}] |
77 | mysql? ( dev-python/mysql-python[${PYTHON_USEDEP}] ) |
78 | postgres? ( dev-python/psycopg[${PYTHON_USEDEP}] )" |
79 | DEPEND="${RDEPEND} |
80 | sys-devel/flex" |
81 | |
82 | DOCS=( CONTRIB DEPRECATED NEWS README Doc/. ) |
83 | |
84 | PATCHES=( "${FILESDIR}/${PN}-1.62-SffIO.patch" ) |
85 | |
86 | python_test() { |
87 | cd Tests || die |
88 | ${PYTHON} run_tests.py || die |
89 | } |
90 | |
91 | python_install_all() { |
92 | distutils-r1_python_install_all |
93 | |
94 | dodir /usr/share/${PN} |
95 | cp -r --preserve=mode Scripts Tests "${ED}"/usr/share/${PN} || die |
96 | } |