Gentoo Archives: gentoo-commits

From: "Justin Lecher (jlec)" <jlec@g.o>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] gentoo-x86 commit in sci-biology/biopython: biopython-1.62-r1.ebuild ChangeLog
Date: Sun, 29 Dec 2013 00:57:03
Message-Id: 20131229005658.D31392004C@flycatcher.gentoo.org
1 jlec 13/12/29 00:56:58
2
3 Modified: ChangeLog
4 Added: biopython-1.62-r1.ebuild
5 Log:
6 sci-biology/biopython: Add additional patch from Martin Mokrejš
7
8 (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
9
10 Revision Changes Path
11 1.73 sci-biology/biopython/ChangeLog
12
13 file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/ChangeLog?rev=1.73&view=markup
14 plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/ChangeLog?rev=1.73&content-type=text/plain
15 diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/ChangeLog?r1=1.72&r2=1.73
16
17 Index: ChangeLog
18 ===================================================================
19 RCS file: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v
20 retrieving revision 1.72
21 retrieving revision 1.73
22 diff -u -r1.72 -r1.73
23 --- ChangeLog 17 Sep 2013 16:07:56 -0000 1.72
24 +++ ChangeLog 29 Dec 2013 00:56:58 -0000 1.73
25 @@ -1,6 +1,12 @@
26 # ChangeLog for sci-biology/biopython
27 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
28 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.72 2013/09/17 16:07:56 jlec Exp $
29 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.73 2013/12/29 00:56:58 jlec Exp $
30 +
31 +*biopython-1.62-r1 (29 Dec 2013)
32 +
33 + 29 Dec 2013; Justin Lecher <jlec@g.o> +biopython-1.62-r1.ebuild,
34 + +files/biopython-1.62-SffIO.patch:
35 + Add additional patch from Martin Mokrejš
36
37 *biopython-1.62 (17 Sep 2013)
38
39
40
41
42 1.1 sci-biology/biopython/biopython-1.62-r1.ebuild
43
44 file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/biopython-1.62-r1.ebuild?rev=1.1&view=markup
45 plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/biopython-1.62-r1.ebuild?rev=1.1&content-type=text/plain
46
47 Index: biopython-1.62-r1.ebuild
48 ===================================================================
49 # Copyright 1999-2013 Gentoo Foundation
50 # Distributed under the terms of the GNU General Public License v2
51 # $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.62-r1.ebuild,v 1.1 2013/12/29 00:56:58 jlec Exp $
52
53 EAPI=5
54
55 PYTHON_COMPAT=( python{2_6,2_7} )
56
57 inherit distutils-r1 eutils
58
59 DESCRIPTION="Python modules for computational molecular biology"
60 HOMEPAGE="http://www.biopython.org/ http://pypi.python.org/pypi/biopython/"
61 SRC_URI="http://www.biopython.org/DIST/${P}.tar.gz"
62
63 LICENSE="HPND"
64 SLOT="0"
65 KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
66 IUSE="mysql postgres"
67
68 REQUIRED_USE="${PYTHON_REQUIRED_USE}"
69
70 RDEPEND="${PYTHON_DEPS}
71 dev-python/matplotlib[${PYTHON_USEDEP}]
72 dev-python/networkx[${PYTHON_USEDEP}]
73 dev-python/numpy[${PYTHON_USEDEP}]
74 dev-python/pygraphviz[${PYTHON_USEDEP}]
75 dev-python/reportlab[${PYTHON_USEDEP}]
76 media-gfx/pydot[${PYTHON_USEDEP}]
77 mysql? ( dev-python/mysql-python[${PYTHON_USEDEP}] )
78 postgres? ( dev-python/psycopg[${PYTHON_USEDEP}] )"
79 DEPEND="${RDEPEND}
80 sys-devel/flex"
81
82 DOCS=( CONTRIB DEPRECATED NEWS README Doc/. )
83
84 PATCHES=( "${FILESDIR}/${PN}-1.62-SffIO.patch" )
85
86 python_test() {
87 cd Tests || die
88 ${PYTHON} run_tests.py || die
89 }
90
91 python_install_all() {
92 distutils-r1_python_install_all
93
94 dodir /usr/share/${PN}
95 cp -r --preserve=mode Scripts Tests "${ED}"/usr/share/${PN} || die
96 }