Gentoo Archives: gentoo-commits

From: Justin Lecher <jlec@g.o>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/bowtie/
Date: Sat, 28 Sep 2013 10:57:04
Message-Id: 1380365807.4603ef2b8bf5e03c44f59aaf2ed43ab046d6ca8f.jlec@gentoo
1 commit: 4603ef2b8bf5e03c44f59aaf2ed43ab046d6ca8f
2 Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
3 AuthorDate: Sat Sep 28 10:56:47 2013 +0000
4 Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
5 CommitDate: Sat Sep 28 10:56:47 2013 +0000
6 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=4603ef2b
7
8 sci-biology/bowtie: Exchange common variables, fix SRC_URI
9
10 Package-Manager: portage-2.2.7
11
12 ---
13 sci-biology/bowtie/ChangeLog | 7 +++++++
14 sci-biology/bowtie/bowtie-2.1.0.ebuild | 6 +++---
15 2 files changed, 10 insertions(+), 3 deletions(-)
16
17 diff --git a/sci-biology/bowtie/ChangeLog b/sci-biology/bowtie/ChangeLog
18 new file mode 100644
19 index 0000000..1a636c5
20 --- /dev/null
21 +++ b/sci-biology/bowtie/ChangeLog
22 @@ -0,0 +1,7 @@
23 +# ChangeLog for sci-biology/bowtie
24 +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
25 +# $Header: $
26 +
27 + 28 Sep 2013; Justin Lecher <jlec@g.o> bowtie-2.1.0.ebuild:
28 + Exchange common variables, fix SRC_URI
29 +
30
31 diff --git a/sci-biology/bowtie/bowtie-2.1.0.ebuild b/sci-biology/bowtie/bowtie-2.1.0.ebuild
32 index 26bf770..a12279a 100644
33 --- a/sci-biology/bowtie/bowtie-2.1.0.ebuild
34 +++ b/sci-biology/bowtie/bowtie-2.1.0.ebuild
35 @@ -8,7 +8,7 @@ inherit eutils toolchain-funcs
36
37 DESCRIPTION="An ultrafast memory-efficient short read aligner"
38 HOMEPAGE="http://bowtie-bio.sourceforge.net/"
39 -SRC_URI="mirror://sourceforge/bowtie-bio/${P}-source.zip"
40 +SRC_URI="mirror://sourceforge/project/${PN}-bio/${PN}2/${PV}/${PN}2-${PV}-source.zip"
41
42 LICENSE="GPL-3"
43 SLOT="2"
44 @@ -41,11 +41,11 @@ src_compile() {
45 }
46
47 src_install() {
48 - dobin bowtie2 bowtie2-*
49 + dobin ${PN}2 ${PN}2-*
50 exeinto /usr/share/${PN}2/scripts
51 doexe scripts/*
52
53 - newman MANUAL bowtie2.1
54 + newman MANUAL ${PN}2.1
55 dodoc AUTHORS NEWS TUTORIAL
56 dohtml doc/manual.html doc/style.css