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jlec 12/08/26 13:01:46 |
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|
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Modified: ChangeLog |
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Added: recon-1.06-r2.ebuild |
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Log: |
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sci-biology/recon: Respect CFLAGS and CC, #432660 |
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|
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(Portage version: 2.2.0_alpha122/cvs/Linux x86_64) |
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|
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Revision Changes Path |
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1.3 sci-biology/recon/ChangeLog |
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|
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/recon/ChangeLog?rev=1.3&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/recon/ChangeLog?rev=1.3&content-type=text/plain |
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diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/recon/ChangeLog?r1=1.2&r2=1.3 |
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|
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Index: ChangeLog |
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=================================================================== |
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RCS file: /var/cvsroot/gentoo-x86/sci-biology/recon/ChangeLog,v |
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retrieving revision 1.2 |
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retrieving revision 1.3 |
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diff -u -r1.2 -r1.3 |
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--- ChangeLog 10 Mar 2011 11:12:46 -0000 1.2 |
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+++ ChangeLog 26 Aug 2012 13:01:44 -0000 1.3 |
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@@ -1,6 +1,12 @@ |
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# ChangeLog for sci-biology/recon |
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-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 |
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-# $Header: /var/cvsroot/gentoo-x86/sci-biology/recon/ChangeLog,v 1.2 2011/03/10 11:12:46 jlec Exp $ |
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+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 |
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+# $Header: /var/cvsroot/gentoo-x86/sci-biology/recon/ChangeLog,v 1.3 2012/08/26 13:01:44 jlec Exp $ |
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+ |
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+*recon-1.06-r2 (26 Aug 2012) |
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+ |
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+ 26 Aug 2012; Justin Lecher <jlec@g.o> +recon-1.06-r2.ebuild, |
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+ +files/recon-1.06-respect.patch: |
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+ Respect CFLAGS and CC, #432660 |
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|
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*recon-1.06-r1 (10 Mar 2011) |
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|
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|
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|
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|
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1.1 sci-biology/recon/recon-1.06-r2.ebuild |
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|
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/recon/recon-1.06-r2.ebuild?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/recon/recon-1.06-r2.ebuild?rev=1.1&content-type=text/plain |
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|
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Index: recon-1.06-r2.ebuild |
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=================================================================== |
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# Copyright 1999-2012 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/recon/recon-1.06-r2.ebuild,v 1.1 2012/08/26 13:01:44 jlec Exp $ |
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|
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EAPI="4" |
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|
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inherit eutils toolchain-funcs |
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|
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DESCRIPTION="Automated de novo identification of repeat families from genomic sequences" |
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HOMEPAGE="http://selab.janelia.org/recon.html http://www.repeatmasker.org/RepeatModeler.html" |
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SRC_URI="http://www.repeatmasker.org/RECON${PV}.tar.gz" |
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|
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LICENSE="GPL-2" |
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SLOT="0" |
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IUSE="examples" |
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KEYWORDS="~amd64 ~x86" |
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|
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S="${WORKDIR}/RECON${PV}" |
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|
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src_prepare() { |
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epatch \ |
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"${FILESDIR}"/${PV}-buffer-overflow.patch \ |
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"${FILESDIR}"/${P}-respect.patch |
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sed -i 's|$path = "";|$path = "/usr/libexec/'${PN}'";|' scripts/recon.pl || die |
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tc-export CC |
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} |
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|
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src_compile() { |
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emake -C src |
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} |
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|
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src_install() { |
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dobin scripts/* |
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exeinto /usr/libexec/${PN} |
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doexe src/{edgeredef,eledef,eleredef,famdef,imagespread} |
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dodoc 00README |
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insinto /usr/share/${PN} |
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use examples && doins -r Demos |
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} |
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