Gentoo Archives: gentoo-commits

From: David Seifert <soap@g.o>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] proj/sci:master commit in: /, profiles/
Date: Mon, 16 Oct 2017 00:07:18
Message-Id: 1508112399.c92829b78698fa4df1e36a3dd42490e4c54f21ab.soap@gentoo
1 commit: c92829b78698fa4df1e36a3dd42490e4c54f21ab
2 Author: David Seifert <soap <AT> gentoo <DOT> org>
3 AuthorDate: Mon Oct 16 00:06:39 2017 +0000
4 Commit: David Seifert <soap <AT> gentoo <DOT> org>
5 CommitDate: Mon Oct 16 00:06:39 2017 +0000
6 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=c92829b7
7
8 profiles: remove use.local.desc permanently
9
10 .gitignore | 9 +-
11 profiles/use.local.desc | 401 ------------------------------------------------
12 2 files changed, 8 insertions(+), 402 deletions(-)
13
14 diff --git a/.gitignore b/.gitignore
15 index af5f05fce..cad7e1f46 100644
16 --- a/.gitignore
17 +++ b/.gitignore
18 @@ -1,3 +1,10 @@
19 .DS_Store
20 app-misc/dummy
21 -eclass/*.5
22 +
23 +# from main repo
24 +/.ebuild.x
25 +/distfiles/
26 +/eclass/*.5
27 +/local/
28 +/packages/
29 +/profiles/use.local.desc
30
31 diff --git a/profiles/use.local.desc b/profiles/use.local.desc
32 deleted file mode 100644
33 index 306ae2d81..000000000
34 --- a/profiles/use.local.desc
35 +++ /dev/null
36 @@ -1,401 +0,0 @@
37 -# This file is deprecated as per GLEP 56 in favor of metadata.xml. Please add
38 -# your descriptions to your package's metadata.xml ONLY.
39 -# * generated automatically using egencache *
40 -
41 -app-doc/root-docs:api - Generate html API documentation
42 -app-doc/root-docs:http - Build HttpServer documentation
43 -app-doc/root-docs:math - Provide all math related documentation
44 -app-doc/root-docs:metric - Default to A4 paper size and metric measurement. Letter will be used otherwise
45 -dev-cpp/eigen:adolc - Enable automatic differentiation using sci-libs/adolc
46 -dev-cpp/eigen:metis - Enable matrix partitioning using sci-libs/metis
47 -dev-cpp/eigen:mkl - Use propertary intel blas/lapack implementation through sci-libs/mkl
48 -dev-cpp/eigen:pastix - Enable large scale direct solver with using sci-libs/pastix
49 -dev-cpp/eigen:sparse - Enable use for extra sparse matrix with sci-libs/umfpack, sci-libs/cholmod, sci-libs/superlu and dev-cpp/sparsehash
50 -dev-java/hdf-java:hdf - Add support for the Hierarchical Data Format v.4 (sci-libs/hdf)
51 -dev-java/hdf-java:hdfview - Build a GUI viewer for all files supported in dev-java/hdf-java
52 -dev-java/jogl:cg - Enable NVidia Cg binding.
53 -dev-lang/berkeley_upc:mpi-compat - Enable interoperability with MPI
54 -dev-lang/berkeley_upc:pshm - Build UPC Runtime/GASNet with Process-SHared Memory enabled
55 -dev-lang/berkeley_upc:segment-fast - Select GASNet's FAST segments (default), for the fastest remote access with a possible cost in max shared memory size
56 -dev-lang/berkeley_upc:segment-large - Select GASNet's LARGE segments, for the largest possible shared memory size, at a possible cost in remote access time
57 -dev-lang/berkeley_upc:single - Support running over smp loopback (no network)
58 -dev-lang/berkeley_upc:sptr-packed - Use the more efficient 'packed' shared pointer representation
59 -dev-lang/berkeley_upc:sptr-struct - Use the 'struct' shared pointer representation
60 -dev-lang/berkeley_upc:sptr-symmetric - Enable 'symmetric' pointer variant where available (64-bit smp and shmem)
61 -dev-lang/berkeley_upc:udp - Support running over UDP
62 -dev-lang/conceptual:gui - Build the Java base graphical interface
63 -dev-lang/idb:eclipse - Install the dev-util/eclipse-sdk plugins
64 -dev-lang/path64:assembler - Build PathAS assembler
65 -dev-lang/path64:debugger - Build PathDB debugger
66 -dev-lang/path64:native - Use EKOPath/Path64 for bootstraping
67 -dev-lang/path64:valgrind - Support compiler debugging with dev-util/valgrind
68 -dev-lang/pgi:cuda - Install PGI's CUDA components (e.g. for OpenACC)
69 -dev-lang/pgi:java - Install a PGI-tuned JRE.
70 -dev-libs/intel-common:compiler - Install the libraries needed for the icc and ifort compilers
71 -dev-libs/intel-common:mic - Install the libraries needed for supporting Intel Many Integrated Core (Xeon Phi)
72 -dev-libs/libflatarray:cuda - Enables plugins for NVIDIA GPUs (e.g. CUDAAllocator)
73 -dev-ml/mlgmpidl:mpfr - Add support for dev-libs/mpfr
74 -dev-python/ffnet:matplotlib - Use matplotlib for drawing
75 -dev-python/nbdime:webtools - Install web-based diff and merge tools.
76 -dev-python/pyhdf:szip - Allow to use sci-libs/szip for SZIP compression method in SDsetcompress()
77 -dev-tex/pythontex:highlighting - PLEASE FIX MY DESCRIPTION
78 -dev-util/VampirTrace:cuda - Enable tracing of CUDA calls and GPU kernels.
79 -dev-util/amdapp:examples - Build the OpenCL example programs
80 -dev-util/nvidia-cuda-gdk:healthmon - Install nvidia-healthmon.
81 -dev-util/nvidia-cuda-gdk:nvml - Install the NVIDIA Managment Library.
82 -dev-util/nvidia-cuda-gdk:nvvs - Install the NVIDIA Validation Suite.
83 -media-gfx/brlcad:benchmarks - Run benchmarks during test phase (need test option enabled)
84 -media-gfx/librecad:3d - Require all 2D coordinates stored as 3D
85 -media-gfx/librecad:tools - Build additional tool programs: tff2lff
86 -net-misc/cernbox-client:dolphin - Install the kde-apps/dolphin extension
87 -net-misc/cernbox-client:nautilus - Install the gnome-base/nautilus extension
88 -net-misc/cernbox-client:sftp - Enable sftp transfer support via net-libs/libssh
89 -sci-astronomy/mosstack:opencl - Enables OpenCL support and pulls in pyopencl. This makes some operations much faster but requires specific hardware and drivers.
90 -sci-astronomy/mosstack:qt4 - Pulls in PyQt4. Program works on command line interface without it but for GUI the library is required.
91 -sci-astronomy/psfex:plplot - Build with sci-libs/plplot to allow diagnostic plots during processing
92 -sci-astronomy/scamp:plplot - Build with sci-libs/plplot to allow diagnostic plots during processing
93 -sci-astronomy/sextractor:modelfit - Enable profile model fitting, needs sci-libs/atlas and sci-libs/fftw
94 -sci-astronomy/zpeg:gdl - Install GDL/IDL plotting routines
95 -sci-biology/bru2nii:gui - Build graphical user interface
96 -sci-biology/discrover:cairo - Use Cairo for sequence logo plotting capabilities
97 -sci-biology/discrover:dreme - Enable usage of DREME from the MEME package for seeding
98 -sci-biology/discrover:lto - Compile with link-time optimization (LTO)
99 -sci-biology/discrover:misc_scripts - Install miscellaneous scripts
100 -sci-biology/discrover:rmathlib - Link to the standalone Rmathlib for statistical routines
101 -sci-biology/estscan:icc - Undocumented USE
102 -sci-biology/estscan:ifc - Undocumented USE
103 -sci-biology/exonerate-gff3:utils - Unknown
104 -sci-biology/imagej:plugins - Install additional plugins
105 -sci-biology/ncbi-blast+:boost - Undocumented USE
106 -sci-biology/ncbi-blast+:cppunit - Undocumented USE
107 -sci-biology/ncbi-blast+:freetype - Undocumented USE
108 -sci-biology/ncbi-blast+:mesa - Undocumented USE
109 -sci-biology/ncbi-blast+:muparser - Undocumented USE
110 -sci-biology/ncbi-blast+:sablotron - Undocumented USE
111 -sci-biology/ncbi-blast+:xalan - Undocumented USE
112 -sci-biology/ncbi-blast+:xerces - Undocumented USE
113 -sci-biology/ncbi-blast+:xslt - Undocumented USE
114 -sci-biology/ncbi-tools++:boost - Undocumented USE
115 -sci-biology/ncbi-tools++:cppunit - Undocumented USE
116 -sci-biology/ncbi-tools++:freetype - Undocumented USE
117 -sci-biology/ncbi-tools++:mesa - Undocumented USE
118 -sci-biology/ncbi-tools++:muparser - Undocumented USE
119 -sci-biology/ncbi-tools++:sablotron - Undocumented USE
120 -sci-biology/ncbi-tools++:xalan - Undocumented USE
121 -sci-biology/ncbi-tools++:xerces - Undocumented USE
122 -sci-biology/ncbi-tools++:xslt - Undocumented USE
123 -sci-biology/nilearn:plot - Adds optional dependency needed for plotting function subset.
124 -sci-biology/sga:jemalloc - Use dev-libs/jemalloc
125 -sci-chemistry/ball:cuda - Include cuda support
126 -sci-chemistry/ball:sql - Include SQL database support
127 -sci-chemistry/ball:webkit - Uses dev-qt/qt-webkit for drawing
128 -sci-chemistry/gamess:neo - Enable NEO for nuclear basis support
129 -sci-chemistry/gamess:pax_kernel - Make this package work on PAX kernels
130 -sci-chemistry/gamess:qmmm-tinker - Enable tinker qmmm code
131 -sci-chemistry/gnome-chemistry-utils:gnumeric - Build pluging for gnumeric
132 -sci-chemistry/mdsctk:R - Install dev-lang/R scripts as well
133 -sci-chemistry/nwchem:blas - Use external BLAS library instead of the internal routines
134 -sci-chemistry/nwchem:cuda - Enable CUDA GPU support for the Tensor Contraction Engine generated methods (CI, MBPT, CC)
135 -sci-chemistry/nwchem:int64 - Use 64 bits integers
136 -sci-chemistry/nwchem:lapack - Use external LAPACK library instead of the internal routines
137 -sci-chemistry/nwchem:mrcc - Compile the routines for Multi Reference Coupled Clusters theory
138 -sci-chemistry/nwchem:nwchem-tests - Install qa tests data
139 -sci-chemistry/nwchem:scalapack - Use external SCALAPACK library
140 -sci-chemistry/openbabel:doc - Install API dicumentation.
141 -sci-chemistry/openbabel:java - Install Java bindings.
142 -sci-chemistry/openbabel:openmp - Enable parallelization using OpenMP.
143 -sci-chemistry/openbabel:perl - Install Perl bindings.
144 -sci-chemistry/openbabel:python - Install Python bindings and PyBel.
145 -sci-chemistry/openbabel:ruby - Install Ruby bindings.
146 -sci-chemistry/openbabel:wxwidgets - Build Open Babel GUI.
147 -sci-chemistry/pymol:web - Install Pymodule needed for web app support
148 -sci-chemistry/rosetta:boinc - compile rosetta as a rosetta@home client
149 -sci-chemistry/rosetta:boost - compile rosetta with boost supported code
150 -sci-chemistry/rosetta:float - Build with floats rather than doubles
151 -sci-chemistry/rosetta:lange - Apply patches from www.csrosetta.org
152 -sci-chemistry/shiftx2:debug - Enables debug output in the shiftx2 java part
153 -sci-chemistry/wxmacmolplt:flash - Add support for flash movie generation using media-libs/ming
154 -sci-electronics/player:boost - Automatically generated description for boost
155 -sci-electronics/player:festival - Automatically generated description for festival
156 -sci-electronics/player:openssl - Automatically generated description for openssl
157 -sci-electronics/player:sphinx2 - Automatically generated description for sphinx2
158 -sci-geosciences/qgis:grass - Add support for sci-geosciences/grass
159 -sci-libs/armadillo:arpack - Link with sci-libs/arpack libraries for eigen decomposition
160 -sci-libs/armadillo:atlas - Link with sci-libs/atlas libraries for cblas and clapack
161 -sci-libs/armadillo:mkl - Use matrix allocation from the Intel MKL sci-libs/mkl
162 -sci-libs/armadillo:superlu - Use SuperLU for sparse linear equation solving sci-libs/superlu
163 -sci-libs/armadillo:tbb - Use matrix allocation from the Threads Building Blocks dev-cpp/tbb
164 -sci-libs/arrayfire:cpu - Build CPU backend.
165 -sci-libs/arrayfire:cuda - Build CUDA backend.
166 -sci-libs/arrayfire:graphics - Build with Forge graphics.
167 -sci-libs/arrayfire:nonfree - Build ArrayFire nonfree algorithms.
168 -sci-libs/arrayfire:opencl - Build OpenCL backend.
169 -sci-libs/arrayfire:unified - Build Backend-Independent API.
170 -sci-libs/asl:matlab - Matlab support with sci-libs/matio
171 -sci-libs/atlas:deprecated - Build deprecated routines
172 -sci-libs/atlas:generic - Build atlas assuming a fairly generic architecture (sse2 for x86, core2 for amd64)
173 -sci-libs/atlas:ifko - Use iFKO to improve ATLAS performance (ATTENTION!!! Increases builtime enormously)
174 -sci-libs/bigdft-abi:cuda - Enable support for nVidia CUDA
175 -sci-libs/bigdft-abi:etsf_io - Enable support for reading and writing the European Theoretical Spectroscopy facility (ETSF) file format
176 -sci-libs/bigdft-abi:glib - Compile with GLib Object System support
177 -sci-libs/bigdft-abi:opencl - Enable support for OpenCL GPU acceleration
178 -sci-libs/bigdft-abi:scalapack - Use ScaLAPACK, a subset of LAPACK routines redesigned for heterogenous computing
179 -sci-libs/blas-reference:int64 - Build the 64 bits integer library
180 -sci-libs/calculix-ccx:arpack - Add sparse eigen value support via sci-libs/arpack
181 -sci-libs/cblas-reference:int64 - Build the 64 bits integer library
182 -sci-libs/clblas:client - Build a command line clBLAS client program.
183 -sci-libs/clblas:ktest - A command line tool for testing single clBLAS kernel.
184 -sci-libs/clblas:performance - Copy performance scripts that can measure and graph performance.
185 -sci-libs/clfft:callback_client - Build a command line clFFT client program that tests callback functionality.
186 -sci-libs/clfft:client - Build a command line clFFT client program.
187 -sci-libs/clrng:client - Build a command line clRNG client program.
188 -sci-libs/dealii:adolc - Adds support for ADOL-C (sci-libs/adolc)
189 -sci-libs/dealii:arpack - Adds support for ARPACK (sci-libs/arpack)
190 -sci-libs/dealii:assimp - Add support for assimp (media-libs/assimp)
191 -sci-libs/dealii:c++11 - Compile the library with -std=c++11
192 -sci-libs/dealii:cuda - Add support for cuda assimp (dev-util/nvidia-cuda-sdk)
193 -sci-libs/dealii:debug - Build an additional debug library with extra debug codepaths, like asserts and extra output. If you want to get meaningful backtraces see <http://www.gentoo.org/proj/en/qa/backtraces.xml>
194 -sci-libs/dealii:mesh_converter - Build and install the mesh_converter executable
195 -sci-libs/dealii:metis - Add support for metis (sci-libs/metis)
196 -sci-libs/dealii:mumps - Add support for mumps (sci-libs/mumps)
197 -sci-libs/dealii:muparser - Add support for muparser (dev-cpp/muParser)
198 -sci-libs/dealii:nanoflann - Adds support for nanoflann (sci-libs/nanoflann)
199 -sci-libs/dealii:opencascade - Add support for opencascade (sci-libs/opencascade)
200 -sci-libs/dealii:p4est - Add support for p4est (sci-mathematics/p4est)
201 -sci-libs/dealii:parameter_gui - Build and install the parameter_gui executable
202 -sci-libs/dealii:petsc - Add support for petsc (sci-mathematics/petsc)
203 -sci-libs/dealii:slepc - Add support for slepc (sci-mathematics/slepc)
204 -sci-libs/dealii:sparse - Add support for suitesparse (sci-libs/suitesparse)
205 -sci-libs/dealii:sundials - Add support for sundials assimp (sci-libs/sundials)
206 -sci-libs/dealii:tbb - Add threading support with the help of the tbb library (dev-cpp/tbb)
207 -sci-libs/dealii:trilinos - Add support for trilinos (sci-libs/trilinos)
208 -sci-libs/etsf_io:pic - Compile Position Independent Code
209 -sci-libs/factory:singular - Enable support for sci-mathematics/singular
210 -sci-libs/fox:dom - Compile the W3C document object model module
211 -sci-libs/fox:fast - Compile with best known optimization flags
212 -sci-libs/fox:sax - Compile the streaming, validating parser based on java's Simple API for XML
213 -sci-libs/fox:wcml - Compile the module for a subset of the Chemical Markup Language
214 -sci-libs/fox:wkml - Compile the module for the creation of KML documents used by applications such as Google Earth
215 -sci-libs/fox:wxml - Compile the XML writer used to sequentially create arbitrary XML documents quickly with minimal memory requirements
216 -sci-libs/gmsh:cgns - Enables cgns output support
217 -sci-libs/gmsh:chaco - Enables chaco partitioner support
218 -sci-libs/gmsh:med - Enables med support
219 -sci-libs/gmsh:metis - Enables metis support
220 -sci-libs/gmsh:netgen - Enable 3D Frontal triangulation using netgen lib
221 -sci-libs/gmsh:opencascade - Enable OpenCASCADE support
222 -sci-libs/gmsh:petsc - Enable sci-mathematics/petsc support
223 -sci-libs/gmsh:taucs - Enable sci-libs/taucs support
224 -sci-libs/gmsh:tetgen - Enable 3D delauny triangulation using tetgen lib
225 -sci-libs/gotoblas2:incblas - Build the CBLAS interface
226 -sci-libs/gotoblas2:int64 - Build the 64 bits integer library
227 -sci-libs/gsl:cblas-external - Link gsl with external cblas provided by (virtual/cblas) instead of shipped internal version
228 -sci-libs/itk:itkv3compat - Enable compatibility with ITK version 3
229 -sci-libs/itk:review - Enable compilation of methods under review
230 -sci-libs/itk:vtkglue - PLEASE FIX MY DESCRIPTION
231 -sci-libs/lapack-reference:deprecated - Build deprecated routines
232 -sci-libs/lapack-reference:int64 - Build the 64 bits integer library
233 -sci-libs/lapack-reference:xblas - Build LAPACK with extra precision (needs sci-libs/xblas)
234 -sci-libs/lapacke-reference:deprecated - Build deprecated routines
235 -sci-libs/lapacke-reference:tmg - Build LAPACKE with a Test Matrix Generator library
236 -sci-libs/lapacke-reference:xblas - Build LAPACKE with extra precision (needs sci-libs/xblas)
237 -sci-libs/libfac:singular - Automatically generated description for singular
238 -sci-libs/libgeodecomp:cuda - Enables plugins for NVIDIA GPUs (e.g. CUDASimulator and CUDAStepper)
239 -sci-libs/libgeodecomp:hpx - Activates the HPX backend as an alternative to the usual MPI backends.
240 -sci-libs/libgeodecomp:opencl - Builds those plugins which can offload to OpenCL devices.
241 -sci-libs/libgeodecomp:opencv - Some input components can read from cameras etc. via OpenCV
242 -sci-libs/libgeodecomp:qt4 - Adds the QTWidgetWriter, which allows in situ visualization of a running simulation.
243 -sci-libs/libgeodecomp:scotch - Optinally use Scotch for domain decomposition.
244 -sci-libs/libgeodecomp:visit - Add in situ visualization for big simulations via VisIt.
245 -sci-libs/lwpr:octave - Add sci-mathematics/octave support
246 -sci-libs/mkl:int64 - Build the 64 bits integer library
247 -sci-libs/mkl:mic - Install the libraries needed for supporting Intel Many Integrated Core (Xeon Phi)
248 -sci-libs/nexus:doc - Generate library documentation with app-doc/doxygen
249 -sci-libs/nexus:fortran - Build the Fortran bindings
250 -sci-libs/nexus:hdf4 - Support the old HDF4 representation
251 -sci-libs/nexus:hdf5 - Support the standard representation (HDF5)
252 -sci-libs/nexus:java - Build the Java bindings
253 -sci-libs/nexus:utils - Build optional utility applications
254 -sci-libs/nexus:xml - Allow using the verbose XML representation of NeXus data
255 -sci-libs/nibabel:dicom - Adds limited read support for the DICOM imaging format.
256 -sci-libs/oasa:cairo - Add support for Cairo graphics library using dev-python/pycairo
257 -sci-libs/openblas:dynamic - Build dynamic architecture detection at run time (for multi targets)
258 -sci-libs/openblas:int64 - Build the 64 bits integer library
259 -sci-libs/pagmo:eigen - Use eigen, a c++ linear algebra library, for algorithms like CAMES
260 -sci-libs/pagmo:ipopt - Use ipopt, a interior-point optimizer
261 -sci-libs/pagmo:nlopt - Use nlopt, a non-linear optimization library
262 -sci-libs/parmetis:double-precision - Floating-point operation done as double precision
263 -sci-libs/parmetis:int64 - Build the 64 bits integer library (needed for > 2^31 vertices)
264 -sci-libs/scikits_image:freeimage - Enable support for image i/o via media-libs/freeimage
265 -sci-libs/scikits_image:pyamg - Enable support for algebraic solvers via dev-python/pyamg
266 -sci-libs/symengine:boost - Add support for boost (dev-libs/boost)
267 -sci-libs/trilinos:adolc - Add support for adolc (sci-libs/adolc)
268 -sci-libs/trilinos:arprec - Add support for arprec (sci-libs/arprec)
269 -sci-libs/trilinos:boost - Add support for boost (dev-libs/boost)
270 -sci-libs/trilinos:clp - Add support for clp (sci-libs/coinor-clp)
271 -sci-libs/trilinos:cppunit - Add support for (...)
272 -sci-libs/trilinos:cuda - Add support for cuda (dev-util/nvidia-cuda-toolkit)
273 -sci-libs/trilinos:eigen - Add support for eigen (dev-cpp/eigen)
274 -sci-libs/trilinos:glpk - Add support for (...)
275 -sci-libs/trilinos:gtest - Add support for gtest (dev-cpp/gtest)
276 -sci-libs/trilinos:hdf5 - Add support for hdf5 (sci-libs/hdf5)
277 -sci-libs/trilinos:hwloc - Add support for hwloc (sys-apps/hwloc)
278 -sci-libs/trilinos:hypre - Add support for hypre (sci-libs/hypre)
279 -sci-libs/trilinos:matio - Add support for matio (sci-libs/matio)
280 -sci-libs/trilinos:metis - Add support for metis (sci-libs/metis or sci-libs/parmetis)
281 -sci-libs/trilinos:mkl - Add support for mkl (sci-libs/mkl)
282 -sci-libs/trilinos:mumps - Add support for mumps (sci-libs/mumps)
283 -sci-libs/trilinos:netcdf - Add support for netcdf (sci-libs/netcdf)
284 -sci-libs/trilinos:petsc - Add support for petsc (sci-mathematics/petsc)
285 -sci-libs/trilinos:qd - Add support for qd (sci-libs/qd)
286 -sci-libs/trilinos:scalapack - Add support for scalapack (virtual/scalapack)
287 -sci-libs/trilinos:scotch - Add support for scotch (sci-libs/scotch)
288 -sci-libs/trilinos:sparse - Add support for sparse matrix solvers (sci-libs/umfpack)
289 -sci-libs/trilinos:superlu - Add support for superlu (sci-libs/superlu)
290 -sci-libs/trilinos:taucs - Add support for taucs (sci-libs/taucs)
291 -sci-libs/trilinos:tbb - Add support for threading building blocks library (dev-cpp/tbb)
292 -sci-libs/trilinos:tvmet - Add support for tvmet (dev-libs/tvmet)
293 -sci-libs/trilinos:yaml - Add support for yaml (dev-cpp/yaml)
294 -sci-libs/xblas:int64 - Build the 64 bits integer library
295 -sci-mathematics/Macaulay2:optimization - Disable to build with -O0 for debugging.
296 -sci-mathematics/acl2:books - build community books, the canonical collection of open-source libraries
297 -sci-mathematics/dolfin:cgal - Adds support for geometric algorithms with sci-mathematics/cgal
298 -sci-mathematics/dolfin:cholmod - Adds support for sparse Cholesky factorization with sci-libs/cholmod
299 -sci-mathematics/dolfin:hdf5 - Adds support for sci-libs/hdf5
300 -sci-mathematics/dolfin:parmetis - Adds support for parallel graph partitioning with sci-libs/parmetis
301 -sci-mathematics/dolfin:petsc - Adds support for numerical linear algebra toolkit sci-mathematics/petsc
302 -sci-mathematics/dolfin:scotch - Adds support for graph partitioning with sci-libs/scotch
303 -sci-mathematics/dolfin:trilinos - Adds support for numerical linear algebra toolkit sci-libs/trilinos
304 -sci-mathematics/dolfin:umfpack - Adds support for sparse solving with sci-libs/umfpack
305 -sci-mathematics/dolfin:vtk - Adds support for the visualization toolkit sci-libs/vtk
306 -sci-mathematics/gambit:X - Enable gui support using wxWidgets.
307 -sci-mathematics/gap:xtom - Automatically generated description for xtom
308 -sci-mathematics/gismo:doc - Build doxygen-documentation
309 -sci-mathematics/gismo:examples - Build examples
310 -sci-mathematics/gismo:vtk - Build plug-in for sci-mathematics/axel-vtkview
311 -sci-mathematics/htk:hdecode - Install HDecode, a large vocabulary word recogniser
312 -sci-mathematics/htk:hlmtools - Install the tools for manipulation of language models
313 -sci-mathematics/htk:hslab - Install HSLab a label editor for speech label manipulation
314 -sci-mathematics/htk:htkbook - Build the HTK documentation (HTK Book)
315 -sci-mathematics/netgen:opencascade - Enable OpenCASCADE support
316 -sci-mathematics/petsc:afterimage - Use Afterstep image library (media-libs/libafterimage)
317 -sci-mathematics/petsc:boost - Use boost (dev-libs/boost)
318 -sci-mathematics/petsc:complex-scalars - Make scalars complex
319 -sci-mathematics/petsc:hypre - Use HYPRE (sci-mathematics/hypre) and for preconditioning
320 -sci-mathematics/petsc:metis - Add support for metis (sci-libs/parmetis)
321 -sci-mathematics/petsc:mumps - Add support for mumps (sci-libs/mumps)
322 -sci-mathematics/petsc:scotch - Add support for scotch (sci-libs/scotch)
323 -sci-mathematics/petsc:sparse - Use suitesparse (sci-libs/suitesparse) including cholmod (sci-libs/cholmod) for sparse factorization
324 -sci-mathematics/petsc:superlu - Use superlu (sci-libs/superlu) for preconditioning
325 -sci-mathematics/scilab:emf - Add suport for exporting to emf files
326 -sci-mathematics/scilab:gui - Build the Java base graphical interface
327 -sci-mathematics/scilab:matio - Enable support for MATLAB file through sci-libs/matio
328 -sci-mathematics/scilab:umfpack - Adds support for sparse solving with sci-libs/umfpack
329 -sci-mathematics/scilab:xcos - Enable building hybrid dynamic systems modeler and simulator Xcos
330 -sci-mathematics/slepc:complex-scalars - Make scalars complex
331 -sci-mathematics/why:apron - Use sci-mathematics/apron library for abstract interpretation
332 -sci-mathematics/why:coq - Add sci-mathematics/coq support
333 -sci-mathematics/why:float - Add sci-mathematics/flocq support
334 -sci-mathematics/why:frama-c - Add sci-mathematics/frama-c support
335 -sci-mathematics/why:gappa - Add sci-mathematics/gappalib-coq support
336 -sci-mathematics/why:pff - Add sci-mathematics/pff support
337 -sci-mathematics/why:why3 - Add sci-mathematics/why3 support
338 -sci-mathematics/why3:float - Add sci-mathematics/flocq support
339 -sci-mathematics/why3:frama-c - Enable Frama-C plugin
340 -sci-misc/elmer-gui:bundled_netgen - Use bundled version of sci-mathematics/netgen
341 -sci-misc/elmer-gui:matc - Enables sci-libs/matc support
342 -sci-misc/elmer-gui:opencascade - Enable sci-libs/opencascade support
343 -sci-misc/elmer-gui:qwt - Enables x11-libs/qwt support
344 -sci-misc/elmer-gui:vtk - Enables sci-libs/vtk support
345 -sci-misc/hfst:foma - Add optional support for foma backend library (sci-misc/foma)
346 -sci-misc/hfst:glib - Parse UTF-8 and collate unicode using glib instead of homebrewn methods
347 -sci-misc/hfst:openfst - Add optional support for openfst backend library (sci-misc/openfst)
348 -sci-misc/hfst:sfst - Add optional support for sfst backend library (sci-misc/sfst)
349 -sci-misc/hfst:xml - Include parsers for grammars and formats that require XML support
350 -sci-misc/kaldi:cuda - Build with CUDA support.
351 -sci-misc/kaldi:double-precision - Build in double precision mode.
352 -sci-physics/abinit:atompaw - Enable support for atompaw, a Projector Augmented Waves atomic data generator
353 -sci-physics/abinit:bigdft - Enable support for BigDFT, DFT package using wavelet basis set
354 -sci-physics/abinit:cuda - Enable support for nVidia CUDA
355 -sci-physics/abinit:cuda-double - Enable support for double precision nVidia CUDA
356 -sci-physics/abinit:etsf_io - Enable support for reading and writing the European Theoretical Spectroscopy facility (ETSF) file format.
357 -sci-physics/abinit:fftw-mpi - Use the MPI version of sci-libs/fftw (always with either openMP or pthreads too)
358 -sci-physics/abinit:fftw-threads - Use the threaded (openMP or pthreads) version of sci-libs/fftw
359 -sci-physics/abinit:fox - Enable support for FoX Fortran XML library
360 -sci-physics/abinit:levmar - Enable support for sci-libs/levmar, the Levenberg-Marquardt least-squares optimisation
361 -sci-physics/abinit:libabinit - Build the libabinit used by sci-libs/bigdft (usage not tested yet, circular dependency not resolved)
362 -sci-physics/abinit:libxc - Enable support for libxc, an exchange-correlation potentials library
363 -sci-physics/abinit:lotf - Activate the Learn on The Fly method (LOTF) for Molecular Dynamics
364 -sci-physics/abinit:scalapack - Use ScaLAPACK, a subset of LAPACK routines redesigned for heterogenous computing
365 -sci-physics/abinit:scripts - Install helper scripts, mostly Python
366 -sci-physics/abinit:vdwxc - Activate van der Waals exchange-correlation correction. Since 7.4.0 no longer optional
367 -sci-physics/abinit:wannier - Enable support for wannier90, a maximally localized Wannier functions (MLWFs) calculator
368 -sci-physics/atompaw:libxc - Enable support for libxc, an exchange-correlation potentials library
369 -sci-physics/atompaw:longplot - Patch the sources to plot functions all over the space considered, not just up to the matching radius plus 50 grid points. May be useless or even harmful.
370 -sci-physics/bigdft:cuda - Enable support for nVidia CUDA GPU acceleration
371 -sci-physics/bigdft:etsf_io - Enable support for reading and writing the European Theoretical Spectroscopy facility (ETSF) file format.
372 -sci-physics/bigdft:glib - Compile with GLib Object System support
373 -sci-physics/bigdft:opencl - Enable support for OpenCL GPU acceleration
374 -sci-physics/bigdft:scalapack - Use ScaLAPACK, a subset of LAPACK routines redesigned for heterogenous computing
375 -sci-physics/elk:libxc - Use sci-libs/libxc library of exchange-correlation functionals by ETSF.
376 -sci-physics/elk:perl - Install perl scripts.
377 -sci-physics/elk:python - Install python scripts.
378 -sci-physics/geant-vmc:g4root - Build G4Root (interface for GEANT4 simulation with a ROOT geometry)
379 -sci-physics/geant-vmc:geant3 - Build with Geant4 G3toG4 library
380 -sci-physics/geant-vmc:mtroot - Build MTRoot (provides ROOT IO manager classes with multi-threading support)
381 -sci-physics/geant-vmc:vgm - Enable the Virtual Geometry Model (sci-physics/vgm)
382 -sci-physics/mc-tester:hepmc - Compile sci-physics/hepmc interface
383 -sci-physics/root:fits - Support for images and data from FITS files with sci-libs/cfitsio
384 -sci-physics/root:geocad - Enable ROOT-CAD interface using sci-libs/opencascade
385 -sci-physics/root:http - Enable http server support including but not limited to fastcgi support
386 -sci-physics/root:math - Build all math related libraries plugins, needs sci-libs/gsl
387 -sci-physics/root:pythia6 - Build the interface for sci-physics/pythia version 6.x
388 -sci-physics/root:pythia8 - Build the interface for sci-physics/pythia version 8.x
389 -sci-physics/root:xrootd - Build the interface for net-libs/xrootd
390 -sci-physics/tauola:hepmc - Compile sci-physics/hepmc interface
391 -sci-physics/tauola:tau-spinner - Compile with TauSpinner library
392 -sci-physics/vgm:geant4 - Enable interaction with Geant4(sci-physics/geant:4)
393 -sci-physics/vgm:root - Enable interactions with ROOT (sci-physics/root)
394 -sci-visualization/mantid:doc - Generate documentation with app-doc/doxygen, QT Assistant etc
395 -sci-visualization/mantid:opencascade - Use OpenCascade to show 3D models of instruments
396 -sci-visualization/mantid:opencl - Use OpenCL to accelerate calculations
397 -sci-visualization/mantid:paraview - Enable the Visualisation and Analysis Toolkit ExtensionS (VATES)
398 -sci-visualization/mantid:tcmalloc - Use thread-caching malloc
399 -sci-visualization/nodemon:pbs - Enable support for the Portable Batch System.
400 -sci-visualization/v_sim:abinit - Add support for ABINIT file formats sci-physics/abinit
401 -sci-visualization/v_sim:cube - Add support plug-in support for Cube files (densities and structures)
402 -sci-visualization/v_sim:openbabel - Add support for ABINIT file formats sci-chemistry/openbabel
403 -sci-visualization/v_sim:xsf - plug-in support for files that follow the XCrysDen format for structural positions and densities
404 -sys-cluster/htcondor:X - Enable the HTCondor Keyboard Daemon to monitor logged in X users for activity
405 -sys-cluster/htcondor:boinc - Enable backfill with BOINC jobs when the cluster is not being used
406 -sys-cluster/htcondor:cgroup - Use dev-libs/libcgroup for kernel control groups
407 -sys-cluster/htcondor:contrib - Build contrib modules
408 -sys-cluster/htcondor:dmtcp - Use sys-apps/dmtcp for checkpointing
409 -sys-cluster/htcondor:libvirt - Use app-emulation/libvirt for virtualisation
410 -sys-cluster/htcondor:management - Use net-libs/qmf for management
411 -sys-cluster/htcondor:minimal - Don't support standard universe jobs
412 -sys-cluster/lustre:client - Enable kernel client modules
413 -sys-cluster/lustre:dlc - Enable Dynamic LNET Configuration
414 -sys-cluster/lustre:server - Enable kernels server modules
415 -sys-cluster/lustre:tests - Enable installation of tests
416 -sys-cluster/lustre:utils - Enable lustre utils
417 -sys-cluster/mpich:mpi-threads - Enable MPI_THREAD_MULTIPLE
418 -sys-cluster/mpich:romio - Build the ROMIO MPI-IO component
419 -sys-cluster/mpich2:mpi-threads - Enable MPI_THREAD_MULTIPLE
420 -sys-cluster/mpich2:romio - Build the ROMIO MPI-IO component
421 -sys-cluster/mvapich2:large-cluster - Automatically generated description for large-cluster
422 -sys-cluster/mvapich2:medium-cluster - Automatically generated description for medium-cluster
423 -sys-cluster/mvapich2:romio - Automatically generated description for romio
424 -sys-cluster/openmpi:cma - Enable the CMA (Cross Memory Attach) MCA
425 -sys-cluster/openmpi:cuda - Add GPU direct support
426 -sys-cluster/openmpi:heterogeneous - Enable features required for heterogeneous platform support
427 -sys-cluster/openmpi:mpi-threads - Enable MPI_THREAD_MULTIPLE
428 -sys-cluster/openmpi:numa - Enable numactl to allow binding processes to CPUs
429 -sys-cluster/openmpi:romio - Build the ROMIO MPI-IO component
430 -sys-cluster/openmpi:vt - Enable bundled VampirTrace support
431 -virtual/blacs:int64 - Add eselect module for blas libraries built with 64 bits integer ABI
432 -virtual/blas:int64 - Add eselect module for blas libraries built with 64 bits integer ABI
433 -virtual/cblas:int64 - Add eselect module for cblas libraries built with 64 bits integer ABI
434 -virtual/lapack:int64 - Add eselect module for lapack libraries built with 64 bits integer ABI
435 -virtual/lapacke:int64 - Add eselect module for blas libraries built with 64 bits integer ABI
436 -virtual/scalapack:int64 - Add eselect module for blas libraries built with 64 bits integer ABI
437 -x11-libs/agg:gpc - Enable gpc polygon clipper library