| 1 |
commit: a3a57382876fcf7675ad8865da9a4fc18122d5ac |
| 2 |
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
| 3 |
AuthorDate: Tue Nov 21 13:50:40 2017 +0000 |
| 4 |
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
| 5 |
CommitDate: Tue Nov 21 13:50:40 2017 +0000 |
| 6 |
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a3a57382 |
| 7 |
|
| 8 |
sci-biology/SEECER: adjust paths to work with patch -p1 |
| 9 |
|
| 10 |
With bump to EAPI=6 the patch does not apply anymore |
| 11 |
due to extraneous 'SEECER-0.1.3/SEECER/'. |
| 12 |
|
| 13 |
Package-Manager: Portage-2.3.14, Repoman-2.3.6 |
| 14 |
|
| 15 |
sci-biology/SEECER/files/remove-hardcoded-paths.patch | 8 ++++---- |
| 16 |
1 file changed, 4 insertions(+), 4 deletions(-) |
| 17 |
|
| 18 |
diff --git a/sci-biology/SEECER/files/remove-hardcoded-paths.patch b/sci-biology/SEECER/files/remove-hardcoded-paths.patch |
| 19 |
index 4e317e6b0..a04ee6759 100644 |
| 20 |
--- a/sci-biology/SEECER/files/remove-hardcoded-paths.patch |
| 21 |
+++ b/sci-biology/SEECER/files/remove-hardcoded-paths.patch |
| 22 |
@@ -1,5 +1,5 @@ |
| 23 |
---- SEECER-0.1.3/SEECER/bin/run_jellyfish.sh.ori 2015-11-13 18:40:01.595807104 +0100 |
| 24 |
-+++ SEECER-0.1.3/SEECER/bin/run_jellyfish.sh 2015-11-13 18:51:45.655818838 +0100 |
| 25 |
+--- bin/run_jellyfish.sh.ori 2015-11-13 18:40:01.595807104 +0100 |
| 26 |
++++ bin/run_jellyfish.sh 2015-11-13 18:51:45.655818838 +0100 |
| 27 |
@@ -3,22 +3,27 @@ |
| 28 |
LCOUNT=$4 |
| 29 |
TMPDIR=$5 |
| 30 |
@@ -33,8 +33,8 @@ |
| 31 |
-$JF dump --lower-count=$LCOUNT -o $2 -c $TMPDIR/jf_merged_$3 |
| 32 |
+$JF dump --lower-count=$LCOUNT -o $2 -c $TMPDIR/jf_merged_$3 || exit 255 |
| 33 |
rm $TMPDIR/jf_merged_$3 |
| 34 |
---- SEECER-0.1.3/SEECER/bin/run_seecer.sh.ori 2015-11-13 18:40:16.215807347 +0100 |
| 35 |
-+++ SEECER-0.1.3/SEECER/bin/run_seecer.sh 2015-11-13 18:53:03.695820138 +0100 |
| 36 |
+--- bin/run_seecer.sh.ori 2015-11-13 18:40:16.215807347 +0100 |
| 37 |
++++ bin/run_seecer.sh 2015-11-13 18:53:03.695820138 +0100 |
| 38 |
@@ -25,8 +25,8 @@ |
| 39 |
# |
Archives