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| From: | "Andrey Kislyuk (weaver)" <weaver@g.o> |
|---|---|
| To: | gentoo-commits@l.g.o |
| Subject: | [gentoo-commits] gentoo-x86 commit in sci-biology/raxml: metadata.xml raxml-7.0.4.ebuild ChangeLog |
| Date: | Thu, 03 Sep 2009 21:56:11 |
| Message-Id: | E1MjP6R-0000np-TZ@stork.gentoo.org |
| 1 | weaver 09/09/04 03:04:43 |
| 2 | |
| 3 | Added: metadata.xml raxml-7.0.4.ebuild ChangeLog |
| 4 | Log: |
| 5 | New package, ebuild written by me |
| 6 | (Portage version: 2.2_rc30/cvs/Linux x86_64) |
| 7 | |
| 8 | Revision Changes Path |
| 9 | 1.1 sci-biology/raxml/metadata.xml |
| 10 | |
| 11 | file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/raxml/metadata.xml?rev=1.1&view=markup |
| 12 | plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/raxml/metadata.xml?rev=1.1&content-type=text/plain |
| 13 | |
| 14 | Index: metadata.xml |
| 15 | =================================================================== |
| 16 | <?xml version="1.0" encoding="UTF-8"?> |
| 17 | <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
| 18 | <pkgmetadata> |
| 19 | <maintainer> |
| 20 | <email>weaver@g.o</email> |
| 21 | <name>Andrey Kislyuk</name> |
| 22 | </maintainer> |
| 23 | <herd>sci-biology</herd> |
| 24 | </pkgmetadata> |
| 25 | |
| 26 | |
| 27 | |
| 28 | 1.1 sci-biology/raxml/raxml-7.0.4.ebuild |
| 29 | |
| 30 | file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/raxml/raxml-7.0.4.ebuild?rev=1.1&view=markup |
| 31 | plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/raxml/raxml-7.0.4.ebuild?rev=1.1&content-type=text/plain |
| 32 | |
| 33 | Index: raxml-7.0.4.ebuild |
| 34 | =================================================================== |
| 35 | # Copyright 1999-2009 Gentoo Foundation |
| 36 | # Distributed under the terms of the GNU General Public License v2 |
| 37 | # $Header: /var/cvsroot/gentoo-x86/sci-biology/raxml/raxml-7.0.4.ebuild,v 1.1 2009/09/04 03:04:43 weaver Exp $ |
| 38 | |
| 39 | EAPI="2" |
| 40 | |
| 41 | inherit toolchain-funcs |
| 42 | |
| 43 | DESCRIPTION="A Program for Sequential, Parallel & Distributed Inference of Large Phylogenetic Trees" |
| 44 | HOMEPAGE="http://icwww.epfl.ch/~stamatak/index-Dateien/Page443.htm" |
| 45 | SRC_URI="http://icwww.epfl.ch/~stamatak/index-Dateien/software/RAxML-${PV}.tar.bz2" |
| 46 | |
| 47 | LICENSE="GPL-2" |
| 48 | SLOT="0" |
| 49 | IUSE="+mpi +threads" |
| 50 | KEYWORDS="~amd64 ~x86" |
| 51 | |
| 52 | DEPEND="mpi? ( virtual/mpi )" |
| 53 | RDEPEND="${DEPEND}" |
| 54 | |
| 55 | S="${WORKDIR}/RAxML-${PV}" |
| 56 | |
| 57 | src_prepare() { |
| 58 | sed -i -e 's/CFLAGS =/CFLAGS := ${CFLAGS}/' \ |
| 59 | -e 's/CC = gcc/CC = '$(tc-getCC)'/' \ |
| 60 | Makefile.* || die |
| 61 | } |
| 62 | |
| 63 | src_compile() { |
| 64 | emake -f Makefile.gcc || die |
| 65 | if use mpi; then emake -f Makefile.MPI clean && emake -f Makefile.MPI || die; fi |
| 66 | if use threads; then emake -f Makefile.PTHREADS clean && emake -f Makefile.PTHREADS || die; fi |
| 67 | } |
| 68 | |
| 69 | src_install() { |
| 70 | dobin raxmlHPC || die |
| 71 | if use mpi; then dobin raxmlHPC-MPI || die; fi |
| 72 | if use threads; then dobin raxmlHPC-PTHREADS || die; fi |
| 73 | } |
| 74 | |
| 75 | |
| 76 | |
| 77 | 1.1 sci-biology/raxml/ChangeLog |
| 78 | |
| 79 | file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/raxml/ChangeLog?rev=1.1&view=markup |
| 80 | plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/raxml/ChangeLog?rev=1.1&content-type=text/plain |
| 81 | |
| 82 | Index: ChangeLog |
| 83 | =================================================================== |
| 84 | # ChangeLog for sci-biology/raxml |
| 85 | # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 |
| 86 | # $Header: /var/cvsroot/gentoo-x86/sci-biology/raxml/ChangeLog,v 1.1 2009/09/04 03:04:43 weaver Exp $ |
| 87 | |
| 88 | *raxml-7.0.4 (03 Sep 2009) |
| 89 | |
| 90 | 03 Sep 2009; Andrey Kislyuk <weaver@g.o> +metadata.xml, |
| 91 | +raxml-7.0.4.ebuild: |
| 92 | New package, ebuild written by me |