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commit: b48f9a93a42d45079330c7b9ecfc27ba5570ac1b |
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Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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AuthorDate: Sun Mar 23 17:10:18 2014 +0000 |
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Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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CommitDate: Sun Mar 23 17:10:18 2014 +0000 |
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URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=b48f9a93 |
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|
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sci-biology/breakdancer: a skeleton for a new package, needs perl help |
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|
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Package-Manager: portage-2.2.7 |
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|
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--- |
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sci-biology/breakdancer/ChangeLog | 9 +++++++++ |
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sci-biology/breakdancer/breakdancer-1.1.2.ebuild | 20 ++++++++++++++++++++ |
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sci-biology/breakdancer/metadata.xml | 9 +++++++++ |
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3 files changed, 38 insertions(+) |
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|
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diff --git a/sci-biology/breakdancer/ChangeLog b/sci-biology/breakdancer/ChangeLog |
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new file mode 100644 |
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index 0000000..2dfc569 |
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--- /dev/null |
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+++ b/sci-biology/breakdancer/ChangeLog |
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@@ -0,0 +1,9 @@ |
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+# ChangeLog for sci-biology/breakdancer |
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+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 |
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+# $Header: $ |
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+ |
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+*breakdancer-1.1.2 (23 Mar 2014) |
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+ |
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+ 23 Mar 2014; Martin Mokrejs <mmokrejs@×××××××××××××××.cz> |
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+ +breakdancer-1.1.2.ebuild, +metadata.xml: |
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+ sci-biology/breakdancer: a skeleton for a new package, needs perl help |
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|
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diff --git a/sci-biology/breakdancer/breakdancer-1.1.2.ebuild b/sci-biology/breakdancer/breakdancer-1.1.2.ebuild |
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new file mode 100644 |
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index 0000000..6aff868 |
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--- /dev/null |
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+++ b/sci-biology/breakdancer/breakdancer-1.1.2.ebuild |
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@@ -0,0 +1,20 @@ |
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+# Copyright 1999-2014 Gentoo Foundation |
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+# Distributed under the terms of the GNU General Public License v2 |
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+# $Header: $ |
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+ |
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+EAPI=5 |
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+ |
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+DESCRIPTION="Genome-wide detection of structural variants from next generation paired-end sequencing reads" |
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+HOMEPAGE="http://breakdancer.sourceforge.net" |
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+SRC_URI="http://sourceforge.net/projects/breakdancer/files/breakdancer-1.1.2_2013_03_08.zip" |
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+ |
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+LICENSE="GPL-3" |
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+SLOT="0" |
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+KEYWORDS="" |
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+IUSE="" |
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+ |
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+DEPEND="dev-lang/perl |
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+ dev-perl/Statistics-Descriptive |
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+ dev-perl/Math-CDF |
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+ sci-biology/samtools" |
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+RDEPEND="${DEPEND}" |
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|
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diff --git a/sci-biology/breakdancer/metadata.xml b/sci-biology/breakdancer/metadata.xml |
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new file mode 100644 |
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index 0000000..07b5255 |
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--- /dev/null |
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+++ b/sci-biology/breakdancer/metadata.xml |
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@@ -0,0 +1,9 @@ |
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+<?xml version="1.0" encoding="UTF-8"?> |
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+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
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+<pkgmetadata> |
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+ <herd>sci-biology</herd> |
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+ <maintainer> |
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+ <email>mmokrejs@×××××××××××××××.cz</email> |
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+ <name>Martin Mokrejs</name> |
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+ </maintainer> |
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+</pkgmetadata> |
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