[gentoo-commits] proj/sci:master commit in: sci-biology/bowtie/

[Martin Mokrejs]

commit:     7653e736bbdbd6d7373e8015b0b79e1855032f83
Author:     Martin Mokrejs <mmokrejs <AT> gmail <DOT> com>
AuthorDate: Wed Dec 30 22:52:06 2020 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Wed Dec 30 22:52:26 2020 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=7653e736

sci-biology/bowtie: version bump

the sci-biology/sra_sdk is not complete in Gentoo so bowtie cannot
use this optional dependency (yet)

Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Martin Mokrejs <mmokrejs <AT> gmail.com>

 sci-biology/bowtie/{bowtie-2.4.1.ebuild => bowtie-2.4.2.ebuild} | 9 ++++++++-
 1 file changed, 8 insertions(+), 1 deletion(-)

diff --git a/sci-biology/bowtie/bowtie-2.4.1.ebuild b/sci-biology/bowtie/bowtie-2.4.2.ebuild
similarity index 86%
rename from sci-biology/bowtie/bowtie-2.4.1.ebuild
rename to sci-biology/bowtie/bowtie-2.4.2.ebuild
index a4d6837ba..3cd8c2cdc 100644
--- a/sci-biology/bowtie/bowtie-2.4.1.ebuild
+++ b/sci-biology/bowtie/bowtie-2.4.2.ebuild
@@ -14,13 +14,15 @@ LICENSE="GPL-3"
 SLOT="2"
 KEYWORDS="~amd64 ~x86"
 
-IUSE="examples cpu_flags_x86_sse2 +tbb"
+IUSE="examples cpu_flags_x86_sse2 +tbb" # sra
+# IUSE=sra Use sra-toolkit to download input datasets on the fly.
 
 RDEPEND="dev-lang/perl
 	tbb? ( dev-cpp/tbb )"
 DEPEND="${RDEPEND}
 	app-arch/unzip
 	sys-libs/readline"
+#	sra? ( sci-biology/sra_sdk )"
 
 S="${WORKDIR}/${PN}2-${PV}"
 
@@ -42,6 +44,7 @@ src_compile() {
 		EXTRA_FLAGS="${LDFLAGS}" \
 		RELEASE_FLAGS="${CXXFLAGS} -msse2" \
 		WITH_TBB="$(usex tbb 1 0)"
+		# USE_SRA="$(usex sra 1 0)"
 }
 
 src_install() {
@@ -58,3 +61,7 @@ src_install() {
 		doins -r example
 	fi
 }
+
+src_test(){
+	emake test
+}