| 1 |
commit: 4f3cb1a1598818ffe5e92cec47aea451216cf22b |
| 2 |
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
| 3 |
AuthorDate: Fri Apr 14 17:16:41 2017 +0000 |
| 4 |
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
| 5 |
CommitDate: Fri Apr 14 17:16:41 2017 +0000 |
| 6 |
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=4f3cb1a1 |
| 7 |
|
| 8 |
sci-biology/bam-readcount: new package |
| 9 |
|
| 10 |
Is needed by VarScan. |
| 11 |
|
| 12 |
Package-Manager: Portage-2.3.5, Repoman-2.3.2 |
| 13 |
|
| 14 |
sci-biology/bam-readcount/bam-readcount-0.8.0.ebuild | 18 ++++++++++++++++++ |
| 15 |
sci-biology/bam-readcount/bam-readcount-9999.ebuild | 18 ++++++++++++++++++ |
| 16 |
sci-biology/bam-readcount/metadata.xml | 12 ++++++++++++ |
| 17 |
3 files changed, 48 insertions(+) |
| 18 |
|
| 19 |
diff --git a/sci-biology/bam-readcount/bam-readcount-0.8.0.ebuild b/sci-biology/bam-readcount/bam-readcount-0.8.0.ebuild |
| 20 |
new file mode 100644 |
| 21 |
index 000000000..dbc344fd9 |
| 22 |
--- /dev/null |
| 23 |
+++ b/sci-biology/bam-readcount/bam-readcount-0.8.0.ebuild |
| 24 |
@@ -0,0 +1,18 @@ |
| 25 |
+# Copyright 1999-2017 Gentoo Foundation |
| 26 |
+# Distributed under the terms of the GNU General Public License v2 |
| 27 |
+ |
| 28 |
+EAPI=5 |
| 29 |
+ |
| 30 |
+inherit cmake-utils |
| 31 |
+ |
| 32 |
+DESCRIPTION="Count DNA sequence reads in BAM files and other statistics calculations" |
| 33 |
+HOMEPAGE="https://github.com/genome/bam-readcount" |
| 34 |
+SRC_URI="https://github.com/genome/bam-readcount/archive/v0.8.0.tar.gz -> ${P}.tar.gz" |
| 35 |
+ |
| 36 |
+LICENSE="MIT" |
| 37 |
+SLOT="0" |
| 38 |
+KEYWORDS="~amd64 ~x86" |
| 39 |
+IUSE="" |
| 40 |
+ |
| 41 |
+DEPEND="" |
| 42 |
+RDEPEND="${DEPEND}" |
| 43 |
|
| 44 |
diff --git a/sci-biology/bam-readcount/bam-readcount-9999.ebuild b/sci-biology/bam-readcount/bam-readcount-9999.ebuild |
| 45 |
new file mode 100644 |
| 46 |
index 000000000..a9b8c4f0b |
| 47 |
--- /dev/null |
| 48 |
+++ b/sci-biology/bam-readcount/bam-readcount-9999.ebuild |
| 49 |
@@ -0,0 +1,18 @@ |
| 50 |
+# Copyright 1999-2017 Gentoo Foundation |
| 51 |
+# Distributed under the terms of the GNU General Public License v2 |
| 52 |
+ |
| 53 |
+EAPI=5 |
| 54 |
+ |
| 55 |
+inherit git-r3 cmake-utils |
| 56 |
+ |
| 57 |
+DESCRIPTION="Count DNA sequence reads in BAM files and other statistics calculations" |
| 58 |
+HOMEPAGE="https://github.com/genome/bam-readcount" |
| 59 |
+EGIT_REPO_URI="https://github.com/genome/bam-readcount.git" |
| 60 |
+ |
| 61 |
+LICENSE="MIT" |
| 62 |
+SLOT="0" |
| 63 |
+KEYWORDS="" |
| 64 |
+IUSE="" |
| 65 |
+ |
| 66 |
+DEPEND="" |
| 67 |
+RDEPEND="${DEPEND}" |
| 68 |
|
| 69 |
diff --git a/sci-biology/bam-readcount/metadata.xml b/sci-biology/bam-readcount/metadata.xml |
| 70 |
new file mode 100644 |
| 71 |
index 000000000..f68a1b6fa |
| 72 |
--- /dev/null |
| 73 |
+++ b/sci-biology/bam-readcount/metadata.xml |
| 74 |
@@ -0,0 +1,12 @@ |
| 75 |
+<?xml version="1.0" encoding="UTF-8"?> |
| 76 |
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
| 77 |
+<pkgmetadata> |
| 78 |
+ <maintainer type="person"> |
| 79 |
+ <email>mmokrejs@×××××××××××××××.cz</email> |
| 80 |
+ <name>Martin Mokrejs</name> |
| 81 |
+ </maintainer> |
| 82 |
+ <maintainer type="project"> |
| 83 |
+ <email>sci-biology@g.o</email> |
| 84 |
+ <name>Gentoo Biology Project</name> |
| 85 |
+ </maintainer> |
| 86 |
+</pkgmetadata> |
Archives