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commit: 326f87e6afac2433c7e131c6a5126e03c845b811 |
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Author: Alexey Shvetsov <alexxy <AT> gentoo <DOT> org> |
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AuthorDate: Thu Mar 29 11:42:27 2018 +0000 |
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Commit: Alexey Shvetsov <alexxy <AT> gentoo <DOT> org> |
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CommitDate: Thu Mar 29 11:42:27 2018 +0000 |
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URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=326f87e6 |
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|
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sci-chemistry/pymol: Version bump |
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|
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Package-Manager: Portage-2.3.24, Repoman-2.3.6 |
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|
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sci-chemistry/pymol/Manifest | 1 + |
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sci-chemistry/pymol/pymol-2.1.0.ebuild | 113 +++++++++++++++++++++++++++++++++ |
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2 files changed, 114 insertions(+) |
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|
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diff --git a/sci-chemistry/pymol/Manifest b/sci-chemistry/pymol/Manifest |
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index efd53bc3a1a..64fe4abc321 100644 |
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--- a/sci-chemistry/pymol/Manifest |
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+++ b/sci-chemistry/pymol/Manifest |
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@@ -1,3 +1,4 @@ |
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DIST pymol-1.8.4.0.png.xz 19528 BLAKE2B f3d23d4cedca3d8bb96b20646a548da4be570697e3346a11b01c5c3599b536ba4697be08472dfa8a4f6533167defc1a37a1de332931a73857319cb28fd42cd2b SHA512 40bb0d3f226476f6e047b5361956aad955232a97641474765eaa5204f0539aee3810e0266213618a45364f9f31f6eb18380b17e0c79f64065f7b62a9016caa7c |
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DIST pymol-v1.8.4.0.tar.bz2 8717344 BLAKE2B a4cfb95eb40a3cd3da5b8cfd4acac7255997f9a3e49ef7e7e1d4c13f36e4aace462a054c326bbaadbc99f22286be878a6d5c518149760b5c939ce9362d4b8cc3 SHA512 73a810adfc31adaf0f3fa25512084882c87b0782c8af716ac0203a5b5b7f0b9fedfbce3d129bffef7b52044e92b0542e683966b2acf961c4dac17fbba72dd7fe |
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DIST pymol-v1.8.6.0.tar.bz2 8717164 BLAKE2B ddcabb81e15b2409ee551900ed09daaf681c7ef0e196eecea36773c131586f6379cd41c50bfa9df8f396ddb1a5da761e8b3409e9656a8f6ac7a87818f4375895 SHA512 bd08e6890382af1503d6af16b27b43af09b372a1229cc9d8e2de311873918b5e7b06e8a2365ce73a5f52cb31ac795f5d91b2ae6ef62890d9c2bf0ea25f856658 |
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+DIST pymol-v2.1.0.tar.bz2 8779083 BLAKE2B 819846a9963ddf3953f53e29a8396ed104dbdafc55fe39ad91363366c7647af3ad833704aff3d4c11f39829545500e00bb18916b6963de4b986423adf700845c SHA512 67175c0668a13826febcb73f7c62a43cfa03a7f86bb80113d52fb337e7d29008684c03163fc06338c4d68edd9246ffcf63aec1ee3110ae91c8a71ef24ab7b605 |
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|
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diff --git a/sci-chemistry/pymol/pymol-2.1.0.ebuild b/sci-chemistry/pymol/pymol-2.1.0.ebuild |
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new file mode 100644 |
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index 00000000000..f29f29694f2 |
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--- /dev/null |
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+++ b/sci-chemistry/pymol/pymol-2.1.0.ebuild |
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@@ -0,0 +1,113 @@ |
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+# Copyright 1999-2018 Gentoo Foundation |
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+# Distributed under the terms of the GNU General Public License v2 |
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+ |
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+EAPI=6 |
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+ |
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+PYTHON_COMPAT=( python2_7 ) |
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+PYTHON_REQ_USE="tk" |
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+ |
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+inherit distutils-r1 eutils xdg-utils flag-o-matic versionator |
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+ |
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+DESCRIPTION="A Python-extensible molecular graphics system" |
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+HOMEPAGE="http://www.pymol.org/" |
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+SRC_URI=" |
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+ https://dev.gentoo.org/~jlec/distfiles/${PN}-1.8.4.0.png.xz |
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+ mirror://sourceforge/project/${PN}/${PN}/$(get_version_component_range 1)/${PN}-v${PV}.tar.bz2 |
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+ " |
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+# git archive -v --prefix=${P}/ master -o ${P}.tar.xz |
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+RESTRICT="mirror" |
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+LICENSE="PSF-2.2" |
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+SLOT="0" |
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+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos" |
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+IUSE="web" |
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+ |
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+DEPEND=" |
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+ dev-libs/msgpack[cxx] |
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+ dev-python/numpy[${PYTHON_USEDEP}] |
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+ dev-python/pyopengl[${PYTHON_USEDEP}] |
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+ media-libs/freeglut |
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+ media-libs/freetype:2 |
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+ media-libs/glew:0= |
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+ media-libs/libpng:0= |
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+ media-video/mpeg-tools |
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+ sys-libs/zlib |
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+ virtual/python-pmw[${PYTHON_USEDEP}] |
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+ !sci-chemistry/pymol-apbs-plugin[${PYTHON_USEDEP}] |
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+ web? ( !dev-python/webpy[${PYTHON_USEDEP}] )" |
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+RDEPEND="${DEPEND}" |
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+ |
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+S="${WORKDIR}"/${PN} |
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+ |
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+python_prepare_all() { |
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+ sed \ |
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+ -e "s:\"/usr:\"${EPREFIX}/usr:g" \ |
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+ -e "/ext_comp_args.*+=/s:\[.*\]$:\[\]:g" \ |
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+ -e "/import/s:argparse:argparseX:g" \ |
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+ -i setup.py || die |
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+ |
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+ sed \ |
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+ -e "s:/opt/local:${EPREFIX}/usr:g" \ |
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+ -e '/ext_comp_args/s:\[.*\]:[]:g' \ |
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+ -i setup.py || die |
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+ sed \ |
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+ -e "s:\['msgpackc'\]:\['msgpack'\]:g" \ |
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+ -i setup.py || die |
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+ |
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+ append-cxxflags -std=c++0x |
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+ |
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+ distutils-r1_python_prepare_all |
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+} |
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+ |
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+python_install() { |
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+ distutils-r1_python_install \ |
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+ --pymol-path="${EPREFIX}/usr/share/pymol" |
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+ |
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+ sed \ |
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+ -e '1d' \ |
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+ -e "/APBS_BINARY_LOCATION/s:None:\"${EPREFIX}/usr/bin/apbs\":g" \ |
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+ -e "/APBS_PSIZE_LOCATION/s:None:\"$(python_get_sitedir)/pdb2pqr/src/\":g" \ |
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+ -e "/APBS_PDB2PQR_LOCATION/s:None:\"$(python_get_sitedir)/pdb2pqr/\":g" \ |
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+ -i "${D}/$(python_get_sitedir)"/pmg_tk/startup/apbs_tools.py || die |
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+} |
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+ |
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+python_install_all() { |
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+ distutils-r1_python_install_all |
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+ |
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+ sed \ |
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+ -e '1i#!/usr/bin/env python' \ |
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+ "${D}/$(python_get_sitedir)"/pymol/__init__.py > "${T}"/${PN} || die |
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+ |
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+ python_foreach_impl python_doscript "${T}"/${PN} |
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+ |
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+ # These environment variables should not go in the wrapper script, or else |
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+ # it will be impossible to use the PyMOL libraries from Python. |
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+ cat >> "${T}"/20pymol <<- EOF |
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+ PYMOL_PATH="${EPREFIX}/usr/share/pymol" |
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+ PYMOL_DATA="${EPREFIX}/usr/share/pymol/data" |
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+ PYMOL_SCRIPTS="${EPREFIX}/usr/share/pymol/scripts" |
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+ EOF |
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+ |
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+ doenvd "${T}"/20pymol |
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+ |
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+ newicon "${WORKDIR}"/${PN}-1.8.4.0.png ${PN}.png |
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+ make_desktop_entry ${PN} PyMol ${PN} \ |
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+ "Graphics;Education;Science;Chemistry;" \ |
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+ "MimeType=chemical/x-pdb;chemical/x-mdl-molfile;chemical/x-mol2;chemical/seq-aa-fasta;chemical/seq-na-fasta;chemical/x-xyz;chemical/x-mdl-sdf;" |
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+ |
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+ if ! use web; then |
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+ rm -rf "${D}/$(python_get_sitedir)/web" || die |
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+ fi |
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+ |
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+ rm -f "${ED}"/usr/share/${PN}/LICENSE || die |
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+} |
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+ |
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+pkg_postinst() { |
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+ xdg_desktop_database_update |
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+ xdg_mimeinfo_database_update |
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+ optfeature "Electrostatic calculations" sci-chemistry/apbs sci-chemistry/pdb2pqr |
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+} |
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+ |
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+pkg_postrm() { |
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+ xdg_desktop_database_update |
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+ xdg_mimeinfo_database_update |
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+} |