[gentoo-commits] gentoo-x86 commit in sci-biology/biopython: biopython-1.58.ebuild ChangeLog

[Andrey Kislyuk (weaver)]

weaver      11/12/26 05:51:16

  Modified:             ChangeLog
  Added:                biopython-1.58.ebuild
  Log:
  Version bump
  
  (Portage version: 2.2.0_alpha74/cvs/Linux x86_64)

Revision  Changes    Path
1.66                 sci-biology/biopython/ChangeLog

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/ChangeLog?rev=1.66&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/ChangeLog?rev=1.66&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/ChangeLog?r1=1.65&r2=1.66

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v
retrieving revision 1.65
retrieving revision 1.66
diff -u -r1.65 -r1.66
--- ChangeLog	23 Jun 2011 14:55:47 -0000	1.65
+++ ChangeLog	26 Dec 2011 05:51:16 -0000	1.66
@@ -1,6 +1,14 @@
 # ChangeLog for sci-biology/biopython
 # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.65 2011/06/23 14:55:47 hwoarang Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.66 2011/12/26 05:51:16 weaver Exp $
+
+  26 Dec 2011; Andrey Kislyuk <weaver@g.o> +biopython-1.58.ebuild:
+  Version bump
+
+*biopython-1.58 (26 Dec 2011)
+
+  26 Dec 2011; Andrey Kislyuk <weaver@g.o> +biopython-1.58.ebuild:
+  Version bump
 
   23 Jun 2011; Markos Chandras <hwoarang@g.o> -biopython-1.56.ebuild:
   Remove old ebuilds. Requested by Arfrever



1.1                  sci-biology/biopython/biopython-1.58.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/biopython-1.58.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/biopython-1.58.ebuild?rev=1.1&content-type=text/plain

Index: biopython-1.58.ebuild
===================================================================
# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.58.ebuild,v 1.1 2011/12/26 05:51:16 weaver Exp $

EAPI=3
PYTHON_DEPEND="2"
SUPPORT_PYTHON_ABIS="1"
RESTRICT_PYTHON_ABIS="3.* *-jython"

inherit distutils eutils

DESCRIPTION="Python modules for computational molecular biology"
HOMEPAGE="http://www.biopython.org/ http://pypi.python.org/pypi/biopython/"
SRC_URI="http://www.biopython.org/DIST/${P}.tar.gz"

LICENSE="as-is"
SLOT="0"
KEYWORDS="~amd64 ~ppc ~x86"
IUSE="mysql postgres"

RDEPEND="
	dev-python/numpy
	dev-python/reportlab
	mysql? ( dev-python/mysql-python )
	postgres? ( dev-python/psycopg )"
DEPEND="${RDEPEND}
	sys-devel/flex"

PYTHON_CFLAGS=("2.* + -fno-strict-aliasing")

DISTUTILS_USE_SEPARATE_SOURCE_DIRECTORIES="1"
DOCS="CONTRIB DEPRECATED NEWS README"
PYTHON_MODNAME="Bio BioSQL"

src_prepare() {
	distutils_src_prepare
	epatch "${FILESDIR}/${PN}-1.51-flex.patch"
}

src_test() {
	testing() {
		cd Tests
		PYTHONPATH="$(ls -d ../build/lib.*)" "$(PYTHON)" run_tests.py
	}
	python_execute_function --nonfatal -s testing
}

src_install() {
	distutils_src_install

	insinto /usr/share/doc/${PF}
	doins -r Doc/* || die "Installation of documentation failed"
	insinto /usr/share/${PN}
	cp -r --preserve=mode Scripts Tests "${ED}usr/share/${PN}" || die "Installation of shared files failed"
}