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commit: ae508e533a7c8d143dbee04f123f5e71b94c6b4a |
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Author: Horea Christian <chr <AT> chymera <DOT> eu> |
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AuthorDate: Sun Sep 27 22:34:55 2020 +0000 |
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Commit: Horea Christian <horea.christ <AT> gmail <DOT> com> |
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CommitDate: Sun Sep 27 22:43:20 2020 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=ae508e53 |
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|
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sci-biology/Atlas: removed discontinued package |
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|
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Package-Manager: Portage-3.0.8, Repoman-3.0.1 |
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Signed-off-by: Horea Christian <chr <AT> chymera.eu> |
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|
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sci-biology/Atlas/Atlas-2005.ebuild | 40 ------------------------------------- |
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sci-biology/Atlas/metadata.xml | 12 ----------- |
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2 files changed, 52 deletions(-) |
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|
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diff --git a/sci-biology/Atlas/Atlas-2005.ebuild b/sci-biology/Atlas/Atlas-2005.ebuild |
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deleted file mode 100644 |
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index cfe09e0f7..000000000 |
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--- a/sci-biology/Atlas/Atlas-2005.ebuild |
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+++ /dev/null |
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@@ -1,40 +0,0 @@ |
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-# Copyright 1999-2016 Gentoo Foundation |
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-# Distributed under the terms of the GNU General Public License v2 |
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- |
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-EAPI=5 |
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- |
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-inherit toolchain-funcs |
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- |
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-DESCRIPTION="Atlas Whole Genome Assembly Suite" |
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-HOMEPAGE="https://www.hgsc.bcm.edu/software/atlas-whole-genome-assembly-suite" |
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-SRC_URI="https://www.hgsc.bcm.edu/sites/default/files/software/Atlas/atlas-src.tgz" |
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-# https://www.hgsc.bcm.edu/sites/default/files/software/Atlas/atlas2005-linux.tgz |
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- |
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-LICENSE="ATLAS" |
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-SLOT="0" |
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-KEYWORDS="" |
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-IUSE="" |
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- |
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-DEPEND="dev-libs/boost" |
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-RDEPEND="${DEPEND}" |
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- |
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-S="${WORKDIR}"/atlas-src/CBT |
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- |
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-src_prepare(){ |
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- sed -e "s/^CC = .*/CC = $(tc-getCC)/" -e "s/^GCC = .*/GCC = $(tc-getCXX)/" -i Makefile || die |
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- sed -e "s/^CC = .*/CC = $(tc-getCC)/" -e "s/^GCC = .*/GCC = $(tc-getCXX)/" -i ../CBTApps/Makefile.in || die |
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- sed -e "s@^# CBT_DEVEL_USER = .*@CBT_DEVEL_USER = ${EPREFIX}/@" -i Makefile || die |
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- sed -e "s@^# CBT_DEVEL_USER = .*@CBT_DEVEL_USER = ${EPREFIX}/@" -i Makefile.in || die |
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- sed -e "s#^CBT_INSTALL_LIB = /home/hgsc/lib/#CBT_INSTALL_LIB = ${EPREFIX}/usr/lib/#" -i Makefile || die |
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- sed -e "s#^CBT_INSTALL_LIB = /home/hgsc/lib/#CBT_INSTALL_LIB = ${EPREFIX}/usr/lib/#" -i Makefile.in || die |
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- sed -e "s#^BOOST_DIR = .*#BOOST_DIR = ${EPREFIX}/usr/lib/#" -i Makefile || die |
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- sed -e "s#^BOOST_DIR = .*#BOOST_DIR = ${EPREFIX}/usr/lib/#" -i Makefile.in || die |
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- sed -e "s#^CXX = .*#CXX = $(tc-getCXX)#" -i gzstream/Makefile || die |
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-} |
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- |
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-src_compile(){ |
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- # install headers, bins and libs into CBT_DEVEL_USER, then compile apps |
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- emake CBT_DEVEL_DIR="${WORKDIR}/atlas-src/CBT" CBT_INSTALL_DIR="${D}"/"${EPREFIX}" |
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- cd ../CBTApps || die |
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- emake CBT_DEVEL_DIR="${WORKDIR}/atlas-src/CBTApps" CBT_INSTALL_DIR="${D}"/"${EPREFIX}" |
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-} |
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|
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diff --git a/sci-biology/Atlas/metadata.xml b/sci-biology/Atlas/metadata.xml |
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deleted file mode 100644 |
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index 138cb7705..000000000 |
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--- a/sci-biology/Atlas/metadata.xml |
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+++ /dev/null |
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@@ -1,12 +0,0 @@ |
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-<?xml version="1.0" encoding="UTF-8"?> |
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-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
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-<pkgmetadata> |
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- <maintainer type="person"> |
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- <email>mmokrejs@×××××××××××××××.cz</email> |
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- <name>Martin Mokrejs</name> |
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- </maintainer> |
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- <maintainer type="project"> |
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- <email>sci-biology@g.o</email> |
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- <name>Gentoo Biology Project</name> |
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- </maintainer> |
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-</pkgmetadata> |