Gentoo Archives: gentoo-commits

From: Martin Mokrejs <mmokrejs@×××××××××××××××.cz>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/CONTIGuator/
Date: Wed, 30 Mar 2016 21:27:54
Message-Id: 1459373116.eb4301c49eff60ce66d076810afbe5a0ed385f9e.mmokrejs@gentoo
1 commit: eb4301c49eff60ce66d076810afbe5a0ed385f9e
2 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
3 AuthorDate: Wed Mar 30 21:25:16 2016 +0000
4 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
5 CommitDate: Wed Mar 30 21:25:16 2016 +0000
6 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=eb4301c4
7
8 sci-biology/CONTIGuator: version bump; added KEYWORDS because DEPENDencies are in the tree now
9
10 Package-Manager: portage-2.2.28
11
12 sci-biology/CONTIGuator/CONTIGuator-2.7.3.ebuild | 31 ++++++++++++++++++++++++
13 sci-biology/CONTIGuator/CONTIGuator-2.7.ebuild | 17 -------------
14 2 files changed, 31 insertions(+), 17 deletions(-)
15
16 diff --git a/sci-biology/CONTIGuator/CONTIGuator-2.7.3.ebuild b/sci-biology/CONTIGuator/CONTIGuator-2.7.3.ebuild
17 new file mode 100644
18 index 0000000..b86613b
19 --- /dev/null
20 +++ b/sci-biology/CONTIGuator/CONTIGuator-2.7.3.ebuild
21 @@ -0,0 +1,31 @@
22 +# Copyright 1999-2016 Gentoo Foundation
23 +# Distributed under the terms of the GNU General Public License v2
24 +# $Id$
25 +
26 +EAPI=6
27 +
28 +DESCRIPTION="Speed up bacterial genome assemblies by artemis and compare chromosome regions"
29 +HOMEPAGE="http://contiguator.sourceforge.net"
30 +SRC_URI="http://downloads.sourceforge.net/project/contiguator/CONTIGuator_v2.7.tar.gz
31 + https://sourceforge.net/projects/contiguator/files/README.md"
32 +
33 +LICENSE="GPL-3"
34 +SLOT="0"
35 +KEYWORDS="~amd64"
36 +IUSE=""
37 +
38 +DEPEND=""
39 +RDEPEND="${DEPEND}
40 + >=sci-biology/abacas-1.3.1
41 + sci-biology/primer3
42 + || ( sci-biology/ncbi-tools++ sci-biology/ncbi-blast+ )
43 + sci-biology/biopython
44 + sci-biology/mummer
45 + || ( sci-biology/artemis || ( sci-biology/artemis-bin sci-biology/act-bin ) )"
46 +
47 +S="${WORKDIR}"/CONTIGuator_v"${PV}"
48 +
49 +src_install(){
50 + dobin CONTIGuator.py
51 + dodoc Manual.pdf "${DISTDIR}"/README.md
52 +}
53
54 diff --git a/sci-biology/CONTIGuator/CONTIGuator-2.7.ebuild b/sci-biology/CONTIGuator/CONTIGuator-2.7.ebuild
55 deleted file mode 100644
56 index 6609fc0..0000000
57 --- a/sci-biology/CONTIGuator/CONTIGuator-2.7.ebuild
58 +++ /dev/null
59 @@ -1,17 +0,0 @@
60 -# Copyright 1999-2014 Gentoo Foundation
61 -# Distributed under the terms of the GNU General Public License v2
62 -# $Id$
63 -
64 -EAPI=5
65 -
66 -DESCRIPTION="Speed up bacterial genome assemblies by artemis and compare chromosome regions"
67 -HOMEPAGE="http://contiguator.sourceforge.net"
68 -SRC_URI="http://downloads.sourceforge.net/project/contiguator/CONTIGuator_v2.7.tar.gz"
69 -
70 -LICENSE="GPL-3"
71 -SLOT="0"
72 -KEYWORDS=""
73 -IUSE=""
74 -
75 -DEPEND="( sci-biology/artemis sci-biology/artemis-bin )"
76 -RDEPEND="${DEPEND}"