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commit: eb4301c49eff60ce66d076810afbe5a0ed385f9e |
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Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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AuthorDate: Wed Mar 30 21:25:16 2016 +0000 |
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Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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CommitDate: Wed Mar 30 21:25:16 2016 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=eb4301c4 |
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|
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sci-biology/CONTIGuator: version bump; added KEYWORDS because DEPENDencies are in the tree now |
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|
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Package-Manager: portage-2.2.28 |
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|
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sci-biology/CONTIGuator/CONTIGuator-2.7.3.ebuild | 31 ++++++++++++++++++++++++ |
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sci-biology/CONTIGuator/CONTIGuator-2.7.ebuild | 17 ------------- |
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2 files changed, 31 insertions(+), 17 deletions(-) |
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|
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diff --git a/sci-biology/CONTIGuator/CONTIGuator-2.7.3.ebuild b/sci-biology/CONTIGuator/CONTIGuator-2.7.3.ebuild |
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new file mode 100644 |
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index 0000000..b86613b |
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--- /dev/null |
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+++ b/sci-biology/CONTIGuator/CONTIGuator-2.7.3.ebuild |
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@@ -0,0 +1,31 @@ |
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+# Copyright 1999-2016 Gentoo Foundation |
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+# Distributed under the terms of the GNU General Public License v2 |
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+# $Id$ |
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+ |
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+EAPI=6 |
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+ |
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+DESCRIPTION="Speed up bacterial genome assemblies by artemis and compare chromosome regions" |
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+HOMEPAGE="http://contiguator.sourceforge.net" |
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+SRC_URI="http://downloads.sourceforge.net/project/contiguator/CONTIGuator_v2.7.tar.gz |
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+ https://sourceforge.net/projects/contiguator/files/README.md" |
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+ |
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+LICENSE="GPL-3" |
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+SLOT="0" |
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+KEYWORDS="~amd64" |
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+IUSE="" |
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+ |
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+DEPEND="" |
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+RDEPEND="${DEPEND} |
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+ >=sci-biology/abacas-1.3.1 |
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+ sci-biology/primer3 |
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+ || ( sci-biology/ncbi-tools++ sci-biology/ncbi-blast+ ) |
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+ sci-biology/biopython |
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+ sci-biology/mummer |
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+ || ( sci-biology/artemis || ( sci-biology/artemis-bin sci-biology/act-bin ) )" |
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+ |
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+S="${WORKDIR}"/CONTIGuator_v"${PV}" |
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+ |
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+src_install(){ |
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+ dobin CONTIGuator.py |
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+ dodoc Manual.pdf "${DISTDIR}"/README.md |
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+} |
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|
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diff --git a/sci-biology/CONTIGuator/CONTIGuator-2.7.ebuild b/sci-biology/CONTIGuator/CONTIGuator-2.7.ebuild |
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deleted file mode 100644 |
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index 6609fc0..0000000 |
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--- a/sci-biology/CONTIGuator/CONTIGuator-2.7.ebuild |
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+++ /dev/null |
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@@ -1,17 +0,0 @@ |
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-# Copyright 1999-2014 Gentoo Foundation |
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-# Distributed under the terms of the GNU General Public License v2 |
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-# $Id$ |
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- |
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-EAPI=5 |
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- |
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-DESCRIPTION="Speed up bacterial genome assemblies by artemis and compare chromosome regions" |
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-HOMEPAGE="http://contiguator.sourceforge.net" |
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-SRC_URI="http://downloads.sourceforge.net/project/contiguator/CONTIGuator_v2.7.tar.gz" |
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- |
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-LICENSE="GPL-3" |
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-SLOT="0" |
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-KEYWORDS="" |
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-IUSE="" |
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- |
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-DEPEND="( sci-biology/artemis sci-biology/artemis-bin )" |
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-RDEPEND="${DEPEND}" |