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From: "Justin Lecher (jlec)" <jlec@g.o>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] gentoo-x86 commit in sci-biology/njplot: njplot-2.3-r1.ebuild njplot-2.3.ebuild ChangeLog
Date: Mon, 02 Mar 2015 13:14:40
Message-Id: 20150302131437.1EB8412E10@oystercatcher.gentoo.org
1 jlec 15/03/02 13:14:37
2
3 Modified: njplot-2.3.ebuild ChangeLog
4 Added: njplot-2.3-r1.ebuild
5 Log:
6 Fix dependencies, #425710; make buildsystem sane; fix format-security
7
8 (Portage version: 2.2.17/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
9
10 Revision Changes Path
11 1.3 sci-biology/njplot/njplot-2.3.ebuild
12
13 file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/njplot/njplot-2.3.ebuild?rev=1.3&view=markup
14 plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/njplot/njplot-2.3.ebuild?rev=1.3&content-type=text/plain
15 diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/njplot/njplot-2.3.ebuild?r1=1.2&r2=1.3
16
17 Index: njplot-2.3.ebuild
18 ===================================================================
19 RCS file: /var/cvsroot/gentoo-x86/sci-biology/njplot/njplot-2.3.ebuild,v
20 retrieving revision 1.2
21 retrieving revision 1.3
22 diff -u -r1.2 -r1.3
23 --- njplot-2.3.ebuild 31 Oct 2009 17:59:45 -0000 1.2
24 +++ njplot-2.3.ebuild 2 Mar 2015 13:14:37 -0000 1.3
25 @@ -1,6 +1,6 @@
26 -# Copyright 1999-2009 Gentoo Foundation
27 +# Copyright 1999-2015 Gentoo Foundation
28 # Distributed under the terms of the GNU General Public License v2
29 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/njplot/njplot-2.3.ebuild,v 1.2 2009/10/31 17:59:45 maekke Exp $
30 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/njplot/njplot-2.3.ebuild,v 1.3 2015/03/02 13:14:37 jlec Exp $
31
32 EAPI="2"
33
34 @@ -9,15 +9,16 @@
35 DESCRIPTION="A phylogenetic tree drawing program which supports tree rooting"
36 HOMEPAGE="http://pbil.univ-lyon1.fr/software/njplot.html"
37 SRC_URI="ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/njplot/archive/njplot-${PV}.tar.gz"
38 -LICENSE="public-domain"
39
40 SLOT="0"
41 +LICENSE="public-domain"
42 KEYWORDS="amd64 x86"
43 IUSE=""
44
45 -RDEPEND="x11-libs/libXmu"
46 -DEPEND="sci-biology/ncbi-tools[X]
47 - ${RDEPEND}"
48 +RDEPEND="
49 + sci-biology/ncbi-tools[X,static-libs]
50 + x11-libs/libXmu"
51 +DEPEND="${RDEPEND}"
52
53 src_prepare() {
54 sed -i -e 's|/banques0/ncbiJun04|/usr/include/ncbi|' \
55
56
57
58 1.13 sci-biology/njplot/ChangeLog
59
60 file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/njplot/ChangeLog?rev=1.13&view=markup
61 plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/njplot/ChangeLog?rev=1.13&content-type=text/plain
62 diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/njplot/ChangeLog?r1=1.12&r2=1.13
63
64 Index: ChangeLog
65 ===================================================================
66 RCS file: /var/cvsroot/gentoo-x86/sci-biology/njplot/ChangeLog,v
67 retrieving revision 1.12
68 retrieving revision 1.13
69 diff -u -r1.12 -r1.13
70 --- ChangeLog 11 Mar 2013 16:22:49 -0000 1.12
71 +++ ChangeLog 2 Mar 2015 13:14:37 -0000 1.13
72 @@ -1,6 +1,13 @@
73 # ChangeLog for sci-biology/njplot
74 -# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
75 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/njplot/ChangeLog,v 1.12 2013/03/11 16:22:49 jlec Exp $
76 +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
77 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/njplot/ChangeLog,v 1.13 2015/03/02 13:14:37 jlec Exp $
78 +
79 +*njplot-2.3-r1 (02 Mar 2015)
80 +
81 + 02 Mar 2015; Justin Lecher <jlec@g.o>
82 + +files/njplot-2.3-buildsystem.patch, +files/njplot-2.3-format-security.patch,
83 + +njplot-2.3-r1.ebuild, njplot-2.3.ebuild:
84 + Fix dependencies, #425710; make buildsystem sane; fix format-security
85
86 11 Mar 2013; Justin Lecher <jlec@g.o> metadata.xml:
87 Drop Andrey as maintainer so that bugs get assigned to sci-biology directly
88 @@ -56,4 +63,3 @@
89 06 Oct 2004; Olivier Fisette <ribosome@g.o> +metadata.xml,
90 +njplot-unrooted-1.ebuild:
91 Initial import.
92 -
93
94
95
96 1.1 sci-biology/njplot/njplot-2.3-r1.ebuild
97
98 file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/njplot/njplot-2.3-r1.ebuild?rev=1.1&view=markup
99 plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/njplot/njplot-2.3-r1.ebuild?rev=1.1&content-type=text/plain
100
101 Index: njplot-2.3-r1.ebuild
102 ===================================================================
103 # Copyright 1999-2015 Gentoo Foundation
104 # Distributed under the terms of the GNU General Public License v2
105 # $Header: /var/cvsroot/gentoo-x86/sci-biology/njplot/njplot-2.3-r1.ebuild,v 1.1 2015/03/02 13:14:37 jlec Exp $
106
107 EAPI=5
108
109 inherit eutils toolchain-funcs
110
111 DESCRIPTION="A phylogenetic tree drawing program which supports tree rooting"
112 HOMEPAGE="http://pbil.univ-lyon1.fr/software/njplot.html"
113 SRC_URI="ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/njplot/archive/njplot-${PV}.tar.gz"
114
115 SLOT="0"
116 LICENSE="public-domain"
117 KEYWORDS="~amd64 ~x86"
118 IUSE=""
119
120 RDEPEND="
121 sci-biology/ncbi-tools[X,static-libs]
122 x11-libs/libXmu"
123 DEPEND="${RDEPEND}"
124
125 src_prepare() {
126 sed -i -e "s%njplot.help%${EPREFIX}/usr/share/doc/${PF}/njplot.help%" njplot-vib.c || die
127 epatch \
128 "${FILESDIR}"/${P}-format-security.patch \
129 "${FILESDIR}"/${P}-buildsystem.patch
130 tc-export CC
131 }
132
133 src_install() {
134 dobin newicktops newicktotxt njplot unrooted
135 doman *.1
136 dodoc README njplot.help
137 }
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