[gentoo-commits] gentoo-x86 commit in sci-biology/meme: ChangeLog meme-4.4.0.ebuild meme-4.2.0.ebuild

[Andrey Kislyuk (weaver)]

weaver      10/05/07 19:40:14

  Modified:             ChangeLog
  Added:                meme-4.4.0.ebuild
  Removed:              meme-4.2.0.ebuild
  Log:
  Version bump
  (Portage version: 2.2_rc67/cvs/Linux x86_64)

Revision  Changes    Path
1.15                 sci-biology/meme/ChangeLog

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/meme/ChangeLog?rev=1.15&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/meme/ChangeLog?rev=1.15&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/meme/ChangeLog?r1=1.14&r2=1.15

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/meme/ChangeLog,v
retrieving revision 1.14
retrieving revision 1.15
diff -u -r1.14 -r1.15
--- ChangeLog	7 Mar 2010 20:56:03 -0000	1.14
+++ ChangeLog	7 May 2010 19:40:14 -0000	1.15
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/meme
 # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/meme/ChangeLog,v 1.14 2010/03/07 20:56:03 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/meme/ChangeLog,v 1.15 2010/05/07 19:40:14 weaver Exp $
+
+*meme-4.4.0 (07 May 2010)
+
+  07 May 2010; Andrey Kislyuk <weaver@g.o> -meme-4.2.0.ebuild,
+  +meme-4.4.0.ebuild:
+  Version bump
 
 *meme-4.3.0-r1 (07 Mar 2010)
 



1.1                  sci-biology/meme/meme-4.4.0.ebuild

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/meme/meme-4.4.0.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/meme/meme-4.4.0.ebuild?rev=1.1&content-type=text/plain

Index: meme-4.4.0.ebuild
===================================================================
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/meme/meme-4.4.0.ebuild,v 1.1 2010/05/07 19:40:14 weaver Exp $

EAPI="2"

inherit autotools eutils

DESCRIPTION="The MEME/MAST system - Motif discovery and search"
HOMEPAGE="http://meme.sdsc.edu/meme"
SRC_URI="http://meme.nbcr.net/downloads/${PN}_${PV}.tar.gz"
LICENSE="meme"

SLOT="0"
KEYWORDS="~amd64 ~x86"

IUSE="mpi"

DEPEND="dev-libs/libxml2
	dev-libs/libxslt
	app-shells/tcsh
	mpi? ( virtual/mpi )"
RDEPEND="${DEPEND}"

S="${WORKDIR}/${PN}_${PV}"

src_prepare() {
	epatch "${FILESDIR}"/${PN}-4.0.0-Makefile.am.patch
	eautoreconf
}

src_configure() {
	MY_PREFIX="${ROOT}opt/meme"
	USE_DISABLE_MPI=""; if ! use mpi; then USE_DISABLE_MPI="--enable-serial"; fi
	econf --prefix=$MY_PREFIX --sysconfdir=${MY_PREFIX}/etc \
		--with-logs="${ROOT}var/log/meme" \
		$USE_DISABLE_MPI
	# $(use_enable openmp)
}

#pkg_setup() {
	# generate meme group to restrict logging to /var/log/meme
#	enewgroup meme
#}

src_install() {
	emake install DESTDIR="${D}" || die "Failed to install program files."
	echo "PATH=/opt/${PN}/bin" > 99${PN}
	doenvd 99${PN} || die
	# allow logging only for members of meme group
	# diropts -m 0770 -g meme -o root
	diropts -m ugo+rwxt -o root
	keepdir /var/log/meme
}

#pkg_postinst() {
#	einfo 'Log files are produced in the "/var/log/meme" directory. Users'
#	einfo 'need to be part of the meme group to use this facility.'
#}

src_test() {
	# bug #297070
	emake -j1 test || die "Regression tests failed."
}