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commit: 7b77093ccf69b45396b77e47661ef62d9cabfdb9 |
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Author: Horea Christian <chr <AT> chymera <DOT> eu> |
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AuthorDate: Mon Sep 28 05:58:42 2020 +0000 |
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Commit: Horea Christian <horea.christ <AT> gmail <DOT> com> |
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CommitDate: Mon Sep 28 05:58:42 2020 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=7b77093c |
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|
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sci-biology/biobambam: removed discontinued package |
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|
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Package-Manager: Portage-3.0.8, Repoman-3.0.1 |
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Signed-off-by: Horea Christian <chr <AT> chymera.eu> |
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|
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sci-biology/biobambam/biobambam-0.0.183.ebuild | 20 -------------------- |
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sci-biology/biobambam/metadata.xml | 21 --------------------- |
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2 files changed, 41 deletions(-) |
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|
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diff --git a/sci-biology/biobambam/biobambam-0.0.183.ebuild b/sci-biology/biobambam/biobambam-0.0.183.ebuild |
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deleted file mode 100644 |
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index 17a247d60..000000000 |
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--- a/sci-biology/biobambam/biobambam-0.0.183.ebuild |
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+++ /dev/null |
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@@ -1,20 +0,0 @@ |
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-# Copyright 1999-2014 Gentoo Foundation |
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-# Distributed under the terms of the GNU General Public License v2 |
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- |
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-EAPI=5 |
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- |
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-FULLVER=${PV}-release-20141208165400 |
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- |
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-DESCRIPTION="Tools for bam file processing" |
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-HOMEPAGE="https://github.com/gt1/biobambam" |
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-SRC_URI="https://github.com/gt1/biobambam/archive/${FULLVER}.tar.gz" |
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- |
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-LICENSE="GPL-3" |
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-SLOT="0" |
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-KEYWORDS="~x86" |
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-IUSE="" |
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- |
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-DEPEND="sci-libs/libmaus" |
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-RDEPEND="${DEPEND}" |
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- |
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-S="${WORKDIR}"/${PN}-${FULLVER} |
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|
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diff --git a/sci-biology/biobambam/metadata.xml b/sci-biology/biobambam/metadata.xml |
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deleted file mode 100644 |
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index 782a697ab..000000000 |
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--- a/sci-biology/biobambam/metadata.xml |
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+++ /dev/null |
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@@ -1,21 +0,0 @@ |
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-<?xml version="1.0" encoding="UTF-8"?> |
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-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
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-<pkgmetadata> |
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- <maintainer type="project"> |
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- <email>sci-biology@g.o</email> |
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- <name>Gentoo Biology Project</name> |
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- </maintainer> |
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- <longdescription lang="en"> |
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-This package contains some tools for processing BAM files including |
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- |
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-bamcollate2: reads BAM and writes BAM reordered such that alignment or collated by query name |
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-bammarkduplicates: reads BAM and writes BAM with duplicate alignments marked using the BAM flags field |
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-bammaskflags: reads BAM and writes BAM while masking (removing) bits from the flags column |
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-bamrecompress: reads BAM and writes BAM with a defined compression setting. This tool is capable of multi-threading. |
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-bamsort: reads BAM and writes BAM resorted by coordinates or query name |
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-bamtofastq: reads BAM and writes FastQ; output can be collated or uncollated by query name |
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-</longdescription> |
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- <upstream> |
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- <remote-id type="github">gt1/biobambam</remote-id> |
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- </upstream> |
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-</pkgmetadata> |