[gentoo-commits] proj/sci:master commit in: sci-biology/RADtools/

[Nicolas Bock]

commit:     5455ecb6436bc4876f92dccf91cf100d3ec2cc5b
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Mar 28 14:30:53 2014 +0000
Commit:     Nicolas Bock <nicolasbock <AT> gmail <DOT> com>
CommitDate: Mon Mar 31 15:27:34 2014 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=5455ecb6

sci-biology/RADtools: new package

Package-Manager: portage-2.2.7

---
 sci-biology/RADtools/ChangeLog             | 10 ++++++++
 sci-biology/RADtools/RADtools-1.2.4.ebuild | 37 ++++++++++++++++++++++++++++++
 sci-biology/RADtools/RADtools-9999.ebuild  | 37 ++++++++++++++++++++++++++++++
 sci-biology/RADtools/metadata.xml          |  9 ++++++++
 4 files changed, 93 insertions(+)

diff --git a/sci-biology/RADtools/ChangeLog b/sci-biology/RADtools/ChangeLog
new file mode 100644
index 0000000..0da9d19
--- /dev/null
+++ b/sci-biology/RADtools/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/RADtools
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*RADtools-1.2.4 (28 Mar 2014)
+*RADtools-9999 (28 Mar 2014)
+
+  28 Mar 2014; Martin Mokrejs <mmokrejs@×××××××××××××××.cz>
+  +RADtools-1.2.4.ebuild, +RADtools-9999.ebuild, +metadata.xml:
+  sci-biology/RADtools: new package

diff --git a/sci-biology/RADtools/RADtools-1.2.4.ebuild b/sci-biology/RADtools/RADtools-1.2.4.ebuild
new file mode 100644
index 0000000..fe4587c
--- /dev/null
+++ b/sci-biology/RADtools/RADtools-1.2.4.ebuild
@@ -0,0 +1,37 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit perl-module
+
+[ "$PV" == "9999" ] && inherit git-2
+
+DESCRIPTION="Tools for processing RAD Sequencing Illumina reads"
+HOMEPAGE="https://www.wiki.ed.ac.uk/display/RADSequencing/Home"
+
+if [ "$PV" == "9999" ]; then
+	EGIT_REPO_URI="git://github.com/johnomics/RADtools.git"
+	KEYWORDS=""
+else
+	SRC_URI="https://www.wiki.ed.ac.uk/download/attachments/68630442/RADtools_"${PV}".tar.gz
+		https://www.wiki.ed.ac.uk/download/attachments/68630442/RADmanual.pdf"
+	KEYWORDS="~amd64"
+	S="${WORKDIR}"
+fi
+
+LICENSE="GPL-3"
+SLOT="0"
+IUSE=""
+
+DEPEND=">=dev-lang/perl-5.10
+	dev-perl/Parallel-ForkManager"
+RDEPEND="${DEPEND}"
+
+src_install() {
+	dobin RADMIDs RADmarkers RADpools RADtags
+	mydoc="CHANGELOG RADmanual.pdf RADmanual.tex README"
+	perl-module_src_install DESTDIR="${D}" # install  RADtools.pm into @INC path
+}
+

diff --git a/sci-biology/RADtools/RADtools-9999.ebuild b/sci-biology/RADtools/RADtools-9999.ebuild
new file mode 100644
index 0000000..fe4587c
--- /dev/null
+++ b/sci-biology/RADtools/RADtools-9999.ebuild
@@ -0,0 +1,37 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit perl-module
+
+[ "$PV" == "9999" ] && inherit git-2
+
+DESCRIPTION="Tools for processing RAD Sequencing Illumina reads"
+HOMEPAGE="https://www.wiki.ed.ac.uk/display/RADSequencing/Home"
+
+if [ "$PV" == "9999" ]; then
+	EGIT_REPO_URI="git://github.com/johnomics/RADtools.git"
+	KEYWORDS=""
+else
+	SRC_URI="https://www.wiki.ed.ac.uk/download/attachments/68630442/RADtools_"${PV}".tar.gz
+		https://www.wiki.ed.ac.uk/download/attachments/68630442/RADmanual.pdf"
+	KEYWORDS="~amd64"
+	S="${WORKDIR}"
+fi
+
+LICENSE="GPL-3"
+SLOT="0"
+IUSE=""
+
+DEPEND=">=dev-lang/perl-5.10
+	dev-perl/Parallel-ForkManager"
+RDEPEND="${DEPEND}"
+
+src_install() {
+	dobin RADMIDs RADmarkers RADpools RADtags
+	mydoc="CHANGELOG RADmanual.pdf RADmanual.tex README"
+	perl-module_src_install DESTDIR="${D}" # install  RADtools.pm into @INC path
+}
+

diff --git a/sci-biology/RADtools/metadata.xml b/sci-biology/RADtools/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/RADtools/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-biology</herd>
+  <maintainer>
+    <email>mmokrejs@×××××××××××××××.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+</pkgmetadata>