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weaver 09/09/30 00:09:21 |
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|
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Modified: ChangeLog |
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Added: gibbs-3.1.ebuild |
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Log: |
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Version bump |
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(Portage version: 2.2_rc30/cvs/Linux x86_64, RepoMan options: --force) |
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|
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Revision Changes Path |
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1.5 sci-biology/gibbs/ChangeLog |
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|
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file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/gibbs/ChangeLog?rev=1.5&view=markup |
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plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/gibbs/ChangeLog?rev=1.5&content-type=text/plain |
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diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/gibbs/ChangeLog?r1=1.4&r2=1.5 |
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|
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Index: ChangeLog |
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=================================================================== |
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RCS file: /var/cvsroot/gentoo-x86/sci-biology/gibbs/ChangeLog,v |
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retrieving revision 1.4 |
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retrieving revision 1.5 |
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diff -u -r1.4 -r1.5 |
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--- ChangeLog 22 Feb 2007 01:26:22 -0000 1.4 |
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+++ ChangeLog 30 Sep 2009 00:09:21 -0000 1.5 |
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@@ -1,6 +1,11 @@ |
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# ChangeLog for sci-biology/gibbs |
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-# Copyright 2000-2007 Gentoo Foundation; Distributed under the GPL v2 |
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-# $Header: /var/cvsroot/gentoo-x86/sci-biology/gibbs/ChangeLog,v 1.4 2007/02/22 01:26:22 jokey Exp $ |
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+# Copyright 2000-2009 Gentoo Foundation; Distributed under the GPL v2 |
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+# $Header: /var/cvsroot/gentoo-x86/sci-biology/gibbs/ChangeLog,v 1.5 2009/09/30 00:09:21 weaver Exp $ |
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+ |
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+*gibbs-3.1 (29 Sep 2009) |
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+ |
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+ 29 Sep 2009; Andrey Kislyuk <weaver@g.o> +gibbs-3.1.ebuild: |
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+ Version bump, rewrite ebuild (package rewritten) |
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|
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22 Feb 2007; Markus Ullmann <jokey@g.o> ChangeLog: |
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Redigest for Manifest2 |
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|
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|
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|
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1.1 sci-biology/gibbs/gibbs-3.1.ebuild |
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|
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file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/gibbs/gibbs-3.1.ebuild?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/gibbs/gibbs-3.1.ebuild?rev=1.1&content-type=text/plain |
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|
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Index: gibbs-3.1.ebuild |
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=================================================================== |
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# Copyright 1999-2009 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/gibbs/gibbs-3.1.ebuild,v 1.1 2009/09/30 00:09:21 weaver Exp $ |
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|
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EAPI="2" |
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|
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inherit autotools |
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|
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DESCRIPTION="The Gibbs Motif Sampler identifies motifs, conserved regions, in DNA or protein sequences" |
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HOMEPAGE="http://bayesweb.wadsworth.org/gibbs/gibbs.html" |
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SRC_URI="mirror://gentoo/gibbs-${PV}.tar.gz" |
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|
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LICENSE="GPL-2" |
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SLOT="0" |
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IUSE="mpi" |
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KEYWORDS="~amd64 ~x86" |
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|
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DEPEND="mpi? ( virtual/mpi |
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sys-cluster/mpe2 )" |
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RDEPEND="${DEPEND}" |
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|
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src_prepare() { |
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sed -i -e 's/CFLAGS="$OPTFLAGS/CFLAGS="$CFLAGS $OPTFLAGS/' \ |
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-e 's/-Werror//' configure.in || die |
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eautoreconf |
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} |
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|
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src_configure() { |
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if use mpi; then export CC=mpicc; fi |
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econf $(use_enable mpi) || die |
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} |
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|
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src_install() { |
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emake DESTDIR="${D}" install || die "install failed" |
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exeinto /usr/share/${PN} |
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doexe *.pl |
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dodoc README ChangeLog |
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} |
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|
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pkg_postinst() { |
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einfo "Supplementary Perl scripts for Gibbs have been installed into /usr/share/${PN}." |
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einfo "These scripts require installation of sci-biology/bioperl." |
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} |
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